View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598_low_47 (Length: 334)
Name: NF0598_low_47
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 80 - 267
Target Start/End: Original strand, 39107411 - 39107598
Alignment:
| Q |
80 |
agagaaaggttatagccacggatttttaacctctcagatgcatgtattggcttccatatgtgacaccctttttccatccattccattaaacaaagaagtc |
179 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39107411 |
agagaaaggttatagccatggatttttaacctctcagatgcatgtattggcttccatatgtgacaccctttttccatccattccattaaacaaagaagtc |
39107510 |
T |
|
| Q |
180 |
tctcaagatgaaaacctctcatccttctattcaacttctggttctcagttcccatttcctgatgaggttctttttccaccaaatttat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39107511 |
tctcaagatgaaaacctctcatccttctattcaacttctggttctcagttcccatttcctgatgaggttctttttccaccaaatttat |
39107598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 832 times since January 2019
Visitors: 3837