View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_5 (Length: 665)
Name: NF0598_low_5
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 127 - 653
Target Start/End: Complemental strand, 44884829 - 44884304
Alignment:
| Q |
127 |
gatatatatacctcttacttgagacaaatatcctatgcaaaacaaaaagcatatgatagtataagaattgaatccatagatacttttgattatgcaatat |
226 |
Q |
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| T |
44884829 |
gatatatatacctcgtacttgagacaaatatcctatgcaaaacaaaaaacata----------agaattgaatccatagatacttttcattatgcaatat |
44884740 |
T |
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| Q |
227 |
gatggatccatcacc---------ctccatatcacaaaaacagcaccctctccctttccctgattcggtgccagcactgccttcctctcctcgtcatcat |
317 |
Q |
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| T |
44884739 |
gatggatccatcatcaccctccatctccatatcacaaaaacagcaccctctccctttccctgaatcggtgtcagcactgccttcctctcctcgtcatcat |
44884640 |
T |
|
| Q |
318 |
tatcataatgacacatctgtgctcctcctcatccctcacgtgcctggctccaaactccgcctcatgtgcagctacggtggccacatcatgccacgtgaca |
417 |
Q |
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| T |
44884639 |
tatcataatgacacatctgatctcctcctcatccctcacgtgcctggctccaaactccgcctcatgtgcagctacggcggccacatcatgccacgtgaca |
44884540 |
T |
|
| Q |
418 |
actccctctactacgttggtggcgacactcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttca |
517 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884539 |
actccctctactacgtcggtggcgacactcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttca |
44884440 |
T |
|
| Q |
518 |
tggaagaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884439 |
tggaagaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagat |
44884340 |
T |
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| Q |
618 |
gagtatgatcgtttgtcttcaaacccttctccttca |
653 |
Q |
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| T |
44884339 |
gagtatgatcgtttgtcttcaaacccttctccttca |
44884304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 577
Target Start/End: Original strand, 30769868 - 30769922
Alignment:
| Q |
523 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
577 |
Q |
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| T |
30769868 |
gaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcat |
30769922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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