View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_low_50 (Length: 328)

Name: NF0598_low_50
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_low_50
NF0598_low_50
[»] chr4 (4 HSPs)
chr4 (92-197)||(46843369-46843474)
chr4 (137-180)||(46838772-46838815)
chr4 (210-259)||(55724763-55724812)
chr4 (212-256)||(48313132-48313176)
[»] chr6 (5 HSPs)
chr6 (210-256)||(21629178-21629224)
chr6 (210-256)||(17605390-17605436)
chr6 (210-253)||(17576773-17576816)
chr6 (210-256)||(18681630-18681676)
chr6 (212-256)||(15956041-15956085)
[»] scaffold1350 (1 HSPs)
scaffold1350 (210-256)||(582-628)
[»] chr8 (2 HSPs)
chr8 (210-256)||(20825338-20825384)
chr8 (212-256)||(10530698-10530742)
[»] chr5 (2 HSPs)
chr5 (210-256)||(33385029-33385075)
chr5 (210-256)||(25856495-25856541)
[»] chr3 (6 HSPs)
chr3 (210-256)||(19891715-19891761)
chr3 (212-256)||(17077355-17077399)
chr3 (210-256)||(12334144-12334190)
chr3 (210-256)||(16179978-16180024)
chr3 (212-256)||(48569081-48569125)
chr3 (210-253)||(15313222-15313265)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 46843369 - 46843474
Alignment:
Q  92 ttattgtggtaacacatttcattttggtttgtnnnnnnnnnnnnnctataattttaaagtatctatatttgtcttcatgcatcaagagaacgatcattca 191  Q
    ||||||||||||||||||||||||||||||||             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46843369 ttattgtggtaacacatttcattttggtttgttaaaaaaaaaaaactataattttagagtatctatatttgtcttcatgcatcaagagaacgatcattca 46843468  T
Q  192 atataa 197  Q
    ||||||    
T  46843469 atataa 46843474  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 46838772 - 46838815
Alignment:
Q  137 ctataattttaaagtatctatatttgtcttcatgcatcaagaga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46838772 ctataattttaaagtatctatatttgtcttcatgcatcaagaga 46838815  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 55724763 - 55724812
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtgctg 259  Q
    ||||| |||| ||||||||||||||| ||||||| |||||||||||||||    
T  55724763 ttgggatcaatattaatgcctcttggctgtctgaagcggcttctgtgctg 55724812  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 48313176 - 48313132
Alignment:
Q  212 ggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    ||||| || ||||||||||||||||||||||| || |||||||||    
T  48313176 ggggtgaatattaatgcctcttggttgtctgaagcagcttctgtg 48313132  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 21629178 - 21629224
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21629178 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 21629224  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 17605390 - 17605436
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  17605390 ttggggtcaacattaatgtctcttggttgtctgaggcggcttctgtg 17605436  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 17576773 - 17576816
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttct 253  Q
    |||||||||||||||||| | | |||||||||||||||||||||    
T  17576773 ttggggtcaacattaatgtcccgtggttgtctgaggcggcttct 17576816  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 18681630 - 18681676
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||| || ||||| |||||||||||||| ||||||||||||    
T  18681630 ttggggtcaatatcaatgcttcttggttgtctgaagcggcttctgtg 18681676  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 15956041 - 15956085
Alignment:
Q  212 ggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||| ||||||||||||||||||||| | ||| ||||||||    
T  15956041 ggggtcaatattaatgcctcttggttgtcttaagcgacttctgtg 15956085  T

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Target: scaffold1350 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 628 - 582
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  628 ttggggtcaatattaatgcctcttggttgtctgaagcggcttctgtg 582  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 20825384 - 20825338
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  20825384 ttggggtcaacattaatgtctcgtggttgtctgaggcggcttctgtg 20825338  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 10530742 - 10530698
Alignment:
Q  212 ggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||| ||||||||||||||||||||||| || |||||||||    
T  10530742 ggggtcaatattaatgcctcttggttgtctgaagcagcttctgtg 10530698  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 33385029 - 33385075
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  33385029 ttggggtcaatattaatgtctcttggttgtctgaggcggcttctgtg 33385075  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 25856495 - 25856541
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  25856495 ttggggtcaacattaatgtctcgtggttgtctgaggcggcctctgtg 25856541  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 19891761 - 19891715
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19891761 ttggggtcaatattaatgcctcttggttgtctgaagcggcttctgtg 19891715  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 17077355 - 17077399
Alignment:
Q  212 ggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||    
T  17077355 ggggtcaatattaatgcctcttggttgtctgaagcggcttctgtg 17077399  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 12334144 - 12334190
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||    
T  12334144 ttggggtcaacattagtgtctcttggttgtctaaggcggcttctgtg 12334190  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 16180024 - 16179978
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  16180024 ttggtgtcaatattaatgcctcttggttgtctgaagcggcttctgtg 16179978  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 48569081 - 48569125
Alignment:
Q  212 ggggtcaacattaatgcctcttggttgtctgaggcggcttctgtg 256  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||    
T  48569081 ggggtgaatattaatgcctcttggttgtctgaagcggcttctgtg 48569125  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 15313265 - 15313222
Alignment:
Q  210 ttggggtcaacattaatgcctcttggttgtctgaggcggcttct 253  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||    
T  15313265 ttggggtcaatattaatgcctcttggttgtctgaagcggattct 15313222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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