View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_55 (Length: 316)
Name: NF0598_low_55
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_55 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 316
Target Start/End: Complemental strand, 1516491 - 1516271
Alignment:
| Q |
96 |
aaactcaggcttaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagct |
195 |
Q |
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| T |
1516491 |
aaactcaggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagct |
1516392 |
T |
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| Q |
196 |
aacaaaaatgttccaattcaacctgagctgaatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaaga |
295 |
Q |
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| T |
1516391 |
acaaaaaatgttccaattcataatgagttgaatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaaga |
1516292 |
T |
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| Q |
296 |
gagcatatagaacaatggctc |
316 |
Q |
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||||||||||||||||||||| |
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| T |
1516291 |
gagcatatagaacaatggctc |
1516271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 316
Target Start/End: Complemental strand, 1530721 - 1530501
Alignment:
| Q |
96 |
aaactcaggcttaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagct |
195 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1530721 |
aaactcaggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagct |
1530622 |
T |
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| Q |
196 |
aacaaaaatgttccaattcaacctgagctgaatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaaga |
295 |
Q |
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| T |
1530621 |
acaaaaaatgttccaattcataatgagttgaatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaaga |
1530522 |
T |
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| Q |
296 |
gagcatatagaacaatggctc |
316 |
Q |
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| T |
1530521 |
gagcatatagaacaatggctc |
1530501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 7978366 - 7978424
Alignment:
| Q |
258 |
tttgagtcctaaaagtgcaacaatggatgacataaagagagcatatagaacaatggctc |
316 |
Q |
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| T |
7978366 |
tttgagtcctagaagttcaacaatgaatgacataaagagagaatatagaacaatggctc |
7978424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 7978196 - 7978307
Alignment:
| Q |
110 |
ttagcatttccaaaccatatcaacatcatatccttccactctcaagt---------agacaacctcgtatgcagttttttgtttcatgcagagcta-aca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||| | ||||||||| ||||||||| || ||||||||||||||| | | | |
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| T |
7978196 |
ttagcatttccaaaccatatcaacatcatatccttccaatttcaaataagcaacaaagacaaccttgtatgcagtgttatgtttcatgcagagccataaa |
7978295 |
T |
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| Q |
200 |
aaaatgttccaa |
211 |
Q |
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| T |
7978296 |
aaaatgttccaa |
7978307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 16553210 - 16553268
Alignment:
| Q |
96 |
aaactcaggcttaattagcatttccaaaccatatcaacatcatatccttccactctcaa |
154 |
Q |
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|||||||||| |||||||||||||||||||||||| || ||||||| |||||||||||| |
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| T |
16553210 |
aaactcaggcataattagcatttccaaaccatatccacgtcatatcattccactctcaa |
16553268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 37592983 - 37593029
Alignment:
| Q |
268 |
aaaagtgcaacaatggatgacataaagagagcatatagaacaatggc |
314 |
Q |
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| T |
37592983 |
aaaagtgcaacaatggaagatataaagagagcttatagatcaatggc |
37593029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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