View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_56 (Length: 316)
Name: NF0598_low_56
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_56 |
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| [»] scaffold0277 (3 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: scaffold0277 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 306
Target Start/End: Original strand, 17708 - 17984
Alignment:
| Q |
30 |
tgcataatgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaa |
129 |
Q |
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| T |
17708 |
tgcataatgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaa |
17807 |
T |
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| Q |
130 |
gtgcatgataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatac |
229 |
Q |
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| T |
17808 |
gtgcatgataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatac |
17907 |
T |
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| Q |
230 |
tccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgtg |
306 |
Q |
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| T |
17908 |
tccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgtg |
17984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 306
Target Start/End: Original strand, 8958 - 9234
Alignment:
| Q |
30 |
tgcataatgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatat-aatatgca |
128 |
Q |
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| T |
8958 |
tgcataatgtt-aatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatattaatatgca |
9056 |
T |
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| Q |
129 |
agtgcatgataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttata |
228 |
Q |
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| T |
9057 |
agtgcatgataagttgataagaaaatactagaagactcgtatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttata |
9156 |
T |
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| Q |
229 |
ctccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgtg |
306 |
Q |
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| T |
9157 |
ctccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgtg |
9234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 1 - 101
Alignment:
| Q |
206 |
tttgcatcttgctagtgtttatactccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgt |
305 |
Q |
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| T |
1 |
tttgcatcttgctagtgtttatactccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgt |
100 |
T |
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| Q |
306 |
g |
306 |
Q |
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| T |
101 |
g |
101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 12384 - 12108
Alignment:
| Q |
30 |
tgcataatgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12384 |
tgcataatgtttaatatattaaaagttatatcttctccaacattagaatttgaatcctcatcctttaactattttatattctcataaatataatatgcaa |
12285 |
T |
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| Q |
130 |
gtgcatgataagttgataagaaaatactagaagactcgcatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatac |
229 |
Q |
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| T |
12284 |
gtgcatgataagttgataagaaaatactagaagactcgtatgcgttttcaggtgtgtgatgccgatgtaagaacattttgcatcttgctagtgtttatac |
12185 |
T |
|
| Q |
230 |
tccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttatcaggtctgtg |
306 |
Q |
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| T |
12184 |
tccaagatatattggtctgtttgtatctttttattggctctagataatctctggccgtttgtgttgtcaggtctgtg |
12108 |
T |
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