View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_57 (Length: 310)
Name: NF0598_low_57
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 34691278 - 34691565
Alignment:
| Q |
1 |
tcatcacatagaacatcataagttatatatatagagtagattcatgtcctcaaaattacatctcctcctatatcgacaataagtttttaaatagattgaa |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691278 |
tcatcacatagaacatcataagttata--tatagagtagattcatgtcctcaaaattacatctcctcctatatcgacaataagtttttaaatagattgaa |
34691375 |
T |
|
| Q |
101 |
atacttactcaaattcatacattttagtaaaattagggtatctcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttcttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691376 |
atacttactcaaattcatacattttagtaaaattagggtatttcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttcttga |
34691475 |
T |
|
| Q |
201 |
tttcacctgatgttctgggtttttatggctttctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691476 |
tttcacctgatgttctgggtttttatggctttctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgt |
34691565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 26989203 - 26989490
Alignment:
| Q |
1 |
tcatcacatagaacatcataagttatatatatagagtagattcatgtcctcaaaattacatctcctcctatatcgacaataagtttttaaatagattgaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26989203 |
tcatcacatagaacatcataagttata--tatagagtagattcatatcctcaaaattacatctcctcctatatcgacaataagtttttaaatagattgaa |
26989300 |
T |
|
| Q |
101 |
atacttactcaaattcatacattttagtaaaattagggtatctcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttcttga |
200 |
Q |
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| T |
26989301 |
atacttactcaaattcatacattttagtaaaattagggtatttcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttcttga |
26989400 |
T |
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| Q |
201 |
tttcacctgatgttctgggtttttatggctttctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgt |
290 |
Q |
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| T |
26989401 |
tttcacctgatgttctgggtttttatggctttctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgt |
26989490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27076072 - 27075856
Alignment:
| Q |
1 |
tcatcacatagaacatcataagttatatatatagagtagattcatgtcctcaaaattacatctcctcctatatcgacaataagtttttaaatagattgaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||| |
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| T |
27076072 |
tcatcacatagaacatcataagtcatatata-------gattcatgtcctcaaaattacatctccttctatatcaacaataattttttaaatatattgac |
27075980 |
T |
|
| Q |
101 |
atacttactcaaattcatacattttagtaaaattagggtatctcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttcttga |
200 |
Q |
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|| ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27075979 |
atgcttactcaaattcttacattttagtaaaattaaggtatttcaaactcatttatatgcttcatcatcatgagtgcattttcttactactctttcttga |
27075880 |
T |
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| Q |
201 |
tttcacc--tgatgttctgggttt |
222 |
Q |
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| ||||| ||||||||||||||| |
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| T |
27075879 |
tgtcacctttgatgttctgggttt |
27075856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27152089 - 27152155
Alignment:
| Q |
1 |
tcatcacatagaacatcataagttatatatatagagtagattcatgtcctcaaaattacatctcctcct |
69 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27152089 |
tcatcacatagaacatcataagttata--tatagagtagattcatgtcctcaaaattacatctcctcct |
27152155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 27028252 - 27028309
Alignment:
| Q |
233 |
ctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgt |
290 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27028252 |
ctttctgaacttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgt |
27028309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 27075848 - 27075810
Alignment:
| Q |
252 |
atgaaacaatagatatctctaaaggtagcctcttcatgt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27075848 |
atgaaacaatagatatctctaaaggtagcctcttcatgt |
27075810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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