View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_70 (Length: 258)
Name: NF0598_low_70
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_70 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 25809337 - 25809214
Alignment:
| Q |
30 |
gaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacagaaaagttaactaaatagagaacaaaatagtatcacaagaaatt |
129 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
25809337 |
gaataaatttccatttataattgacattcaagatgtagaacaacacaacaactacaaaaaaattaactaaatagggaacaaaatagtatcacaagaaatt |
25809238 |
T |
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| Q |
130 |
gaaaaacagctcagattttgggat |
153 |
Q |
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|| ||||||||||||||||||||| |
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| T |
25809237 |
gacaaacagctcagattttgggat |
25809214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 25809166 - 25809109
Alignment:
| Q |
201 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtga |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25809166 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtga |
25809109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 136003 - 135878
Alignment:
| Q |
30 |
gaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacagaaaag--ttaactaaatagagaacaaaatagtatcacaagaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |
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| T |
136003 |
gaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacaaaaaaaaattaactaaatagagaacaaaatagtatcacaaaaaa |
135904 |
T |
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| Q |
128 |
ttgaaaaacagctcagattttgggat |
153 |
Q |
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| T |
135903 |
ttgaaaaacagctcagattttgggat |
135878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 135830 - 135773
Alignment:
| Q |
201 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtga |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135830 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtga |
135773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 23068072 - 23068201
Alignment:
| Q |
30 |
gaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacagaaaag------ttaactaaatagagaacaaaatagtatcacaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||| |
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| T |
23068072 |
gaataaacttccatttataattgacattcaagatgtagaacaacacaataattacaaaaaaaaaaaaattaactaaatagagaacaaaatagtatcacaa |
23068171 |
T |
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| Q |
124 |
gaaattgaaaaacagctcagattttgggat |
153 |
Q |
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| T |
23068172 |
gaaattgaaaaacagctcagattttgggat |
23068201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 23068249 - 23068306
Alignment:
| Q |
201 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtga |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23068249 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtga |
23068306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 26908934 - 26909052
Alignment:
| Q |
30 |
gaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacagaaaagttaactaaatagagaacaaaatagtatcacaagaaatt |
129 |
Q |
| |
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||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||| |
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| T |
26908934 |
gaataaacttccattgataatttagattcaagatgtagaacaacacaacaaa---agaaa--ttaactaaatggagaacaaaaccgtatcacaagaaatt |
26909028 |
T |
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| Q |
130 |
gaaaaacagctcagattttgggat |
153 |
Q |
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|||||||||||||||||||||||| |
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| T |
26909029 |
gaaaaacagctcagattttgggat |
26909052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 26909101 - 26909159
Alignment:
| Q |
201 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagat-gggttcaatgggttgtga |
258 |
Q |
| |
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||||||||||||||||||||| || || ||||||||||| |||||||||||||||||| |
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| T |
26909101 |
tatacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtga |
26909159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 20746552 - 20746496
Alignment:
| Q |
97 |
taaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttgggat |
153 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
20746552 |
taaatagagaacaaaaccgtattacaagaaattgaaaaacagctcagattttgggat |
20746496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 20746447 - 20746389
Alignment:
| Q |
201 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagat-gggttcaatgggttgtga |
258 |
Q |
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||||||||||||||||||||| || || ||||||||||| |||||||||||||||||| |
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| T |
20746447 |
tatacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtga |
20746389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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