View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_low_74 (Length: 251)

Name: NF0598_low_74
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_low_74
NF0598_low_74
[»] chr1 (9 HSPs)
chr1 (9-251)||(6601497-6601739)
chr1 (24-251)||(6592257-6592490)
chr1 (27-246)||(3361788-3362007)
chr1 (9-187)||(2006580-2006758)
chr1 (138-245)||(2948317-2948424)
chr1 (155-246)||(2010604-2010695)
chr1 (138-193)||(9818759-9818814)
chr1 (137-191)||(3340636-3340690)
chr1 (24-108)||(3218255-3218339)
[»] chr4 (1 HSPs)
chr4 (74-248)||(21237603-21237777)
[»] chr5 (1 HSPs)
chr5 (134-248)||(17969929-17970043)
[»] chr2 (2 HSPs)
chr2 (23-248)||(20923545-20923770)
chr2 (23-181)||(20934589-20934747)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 6601497 - 6601739
Alignment:
Q  9 agcatagggcaagtagatatcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttg 108  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6601497 agcaaagggcaagtagatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttg 6601596  T
Q  109 atggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6601597 atggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttc 6601696  T
Q  209 cagcacaaactctttaacaggccttctggttagatgaagagtc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6601697 cagcacaaactctttaacaggccttctggttagatgaagagtc 6601739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 6592257 - 6592490
Alignment:
Q  24 gatatcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagcc 123  Q
    ||||| |||||||||| || ||||| || ||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6592257 gatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagcc 6592356  T
Q  124 aacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccc------tttccagatttccagcacaaa 217  Q
    | || |  ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||  |      |||||||||||| | ||||||    
T  6592357 agcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggtctgggtttttccagatttctaacacaaa 6592456  T
Q  218 ctctttaacaggccttctggttagatgaagagtc 251  Q
    |||||||||  ||| ||||||||||| |||||||    
T  6592457 ctctttaacctgccatctggttagataaagagtc 6592490  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 3362007 - 3361788
Alignment:
Q  27 atcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagccaac 126  Q
    |||| |||||||||||||||||||| ||  ||||| ||   ||  |||||||| ||||||||| |||| |||| ||| |||| ||| ||| |||||||||    
T  3362007 atcatgttttcaaaagaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 3361908  T
Q  127 agttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttccagcacaaactctttaac 226  Q
    ||     |||||||||||||||||||| ||||||||| ||||||||  |||| || ||||||||||   ||  ||| || | |||||||||||||||||     
T  3361907 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaat 3361808  T
Q  227 aggccttctggttagatgaa 246  Q
    |||||||| |||||| ||||    
T  3361807 aggccttcgggttaggtgaa 3361788  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 2006758 - 2006580
Alignment:
Q  9 agcatagggcaagtagatatcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttg 108  Q
    |||| ||||||| |||||||||| || ||||||| ||  ||||||| | ||||||| | || ||||||||| || |||||| | || |||| ||  || |    
T  2006758 agcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagactttttaagttcttcaagccttcaatcgtcg 2006659  T
Q  109 atggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttata 187  Q
    |||| ||| ||||| |||| | | |||||  || ||||||||||| ||||||||||||||||||  ||||||| |||||    
T  2006658 atggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcaccaaggtatcttata 2006580  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 2948317 - 2948424
Alignment:
Q  138 tctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttccagcacaaactctttaacaggccttctgg 237  Q
    |||||||||||||||||||| || || |||||| |||||||||| |||||||||||  |    || || |||| |||||||||||||| | |||||| ||    
T  2948317 tctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgttgatcaaaacaaatgtccaacacaaactctttaatatgccttccgg 2948416  T
Q  238 ttagatga 245  Q
    ||||||||    
T  2948417 ttagatga 2948424  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 2010695 - 2010604
Alignment:
Q  155 ttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttccagcacaaactctttaacaggccttctggttagatgaa 246  Q
    ||||||||||||||||||  ||||||| |||||  |||| |||||| ||||||| | ||||| || ||| | || |||||||||||||||||    
T  2010695 ttgacaagaaaataagcaccaaggtatcttatacggttgtcctttcgagatttcaatcacaagctttttgatagaccttctggttagatgaa 2010604  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 9818759 - 9818814
Alignment:
Q  138 tctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttg 193  Q
    |||||||||||||||||||| || || |||||| |||||||||| |||||||||||    
T  9818759 tctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgttg 9818814  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 3340690 - 3340636
Alignment:
Q  137 ttctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgt 191  Q
    ||||||||| || |||| ||||||||| ||||||||  |||||||||||||||||    
T  3340690 ttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt 3340636  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 3218255 - 3218339
Alignment:
Q  24 gatatcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttg 108  Q
    ||||||||||||||||||| |||||||| ||  ||||| || |  || |||||||| ||||||||| |||| |||| ||| ||||    
T  3218255 gatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg 3218339  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 21237777 - 21237603
Alignment:
Q  74 aagactcttcaagttcctgaatccttgaaatgttgatggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcat 173  Q
    |||||| | |||||||||||| |||| ||| |||| ||| ||| ||||||||||  |   |||||||||||||||||||| ||||||||| ||||||||     
T  21237777 aagactttccaagttcctgaagccttcaaacgttgttggaggtttaagccaacaacttgttaattctaaatgatgtaaactttgacaagagaataagcac 21237678  T
Q  174 gaaggtattttatagcgttgccctttccagatttccagcacaaactctttaacaggccttctggttagatgaaga 248  Q
     ||||||| ||||| | ||||||| ||| ||| |||| |||||  ||||||| || ||||||  ||| |||||||    
T  21237677 caaggtatcttataactttgccctgtcctgatatccaacacaagttctttaatagaccttcttattaaatgaaga 21237603  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 17970043 - 17969929
Alignment:
Q  134 taattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttccagcacaaactctttaacaggcctt 233  Q
    ||||| |||||||||||||| |||| |||||||||||||  ||||||| |||||| ||| ||||  ||| || |||| ||||| |||||||||||  |||    
T  17970043 taattttaaatgatgtaaactttgataagaaaataagcaccaaggtatcttatagagttcccctgcccaaatgtccaacacaagctctttaacagatctt 17969944  T
Q  234 ctggttagatgaaga 248  Q
    |  ||||||||||||    
T  17969943 ccagttagatgaaga 17969929  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 20923770 - 20923545
Alignment:
Q  23 agatatcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagc 122  Q
    |||||||||||||||||||| ||||| || ||  ||||| |||| ||  | |||||| ||||||||| |||| |||| |||  | | ||| ||| |||||    
T  20923770 agatatcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagccttcaaacatcgctggaggtttaagc 20923671  T
Q  123 caacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttccagcacaaactctt 222  Q
     || |   ||| || | |||||||||||||| ||||||||| ||||||||  ||||||| |||||||||||| |   ||| || |||||| |||  | ||    
T  20923670 gaagaacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttt 20923571  T
Q  223 taacaggccttctggttagatgaaga 248  Q
    ||| || |||||| ||||||||||||    
T  20923570 taatagaccttcttgttagatgaaga 20923545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 20934747 - 20934589
Alignment:
Q  23 agatatcaagttttcaaaagaatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagc 122  Q
    |||||||||||||||||||| |||||||| ||  |  ||||| | |||||||||||| |||||| |||| || |||| |||    | ||| ||| ||||     
T  20934747 agatatcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttcaagctcctaaagcctttaaacaacgttggaggtttaaga 20934648  T
Q  123 caacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtat 181  Q
    ||||||  |  |||||  ||||||||||||| ||||||||| ||||||||  |||||||    
T  20934647 caacagaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtat 20934589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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