View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_82 (Length: 249)
Name: NF0598_low_82
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_82 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 41956574 - 41956338
Alignment:
| Q |
13 |
aaaatgacaccaaatcctaagtaaacagtgattagaaattcacacaaattagatctaacacttaaaagtatcacacgagactgaatatataaaaagcgta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||| |
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| T |
41956574 |
aaaatgacaccaaatcctaagtaaacagtgattagaagttcacacaaattagatctaacgcttaaaagtatcacatgagattgaaaatataaaaagcgta |
41956475 |
T |
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| Q |
113 |
gtttacatacactcgactttttacatgaattttggccttgcccctccataannnnnnnnnnnnattcaactattttgatactattattttcgcttnnnnn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41956474 |
gtttacatacactcgactttttacatgaattttggccttgcccctccataattttttatttttattcaactattttgatactattattttcgcttaaaaa |
41956375 |
T |
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| Q |
213 |
nntatataaattaatcttcttgatgtggcgtgtacat |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41956374 |
aatatataaattaatcttcttgatgtggcgtgtacat |
41956338 |
T |
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