View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_92 (Length: 205)
Name: NF0598_low_92
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6111144 - 6111272
Alignment:
| Q |
1 |
tagtatagatgtatggaagccaaatattagtaaaaaagtggaactcatttaccttgatcttgtgttgaataaactctattaatcacagcagcttctggtg |
100 |
Q |
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| T |
6111144 |
tagtatagatgtatggaagccaaatattagtaaaaaagtggaactcatttaccttgatcttgtgttgaataaactctattaatcacagcagcttctggtg |
6111243 |
T |
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| Q |
101 |
gattacttgaagtggatgccatattgttg |
129 |
Q |
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| T |
6111244 |
gattacttgaagtggatgccatattgttg |
6111272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 6183291 - 6183377
Alignment:
| Q |
46 |
catttaccttgatcttgtgttgaataaactctattaatcacagcagcttc---tggtggattacttgaagtggatgccatattgttg |
129 |
Q |
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| T |
6183291 |
catttaccttgatattgtgttgaataaagtctattaatcacatgagcttctagtggtggattacttgaagtggatgccatgttgttg |
6183377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 6090227 - 6090267
Alignment:
| Q |
89 |
cagcttctggtggattacttgaagtggatgccatattgttg |
129 |
Q |
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| T |
6090227 |
cagcttctggtggattacttgaagtggatgccatattgttg |
6090267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 6209748 - 6209832
Alignment:
| Q |
45 |
tcatttaccttgatcttgtgttgaataaactctattaatcacagcagcttctggtggattacttgaagtggatgccatattgttg |
129 |
Q |
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| T |
6209748 |
tcatttacctcgatattgtgttgaataaagtctattaaccgcaacttccgatggtggattacttgaagtggatgccatattgttg |
6209832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 6250890 - 6250923
Alignment:
| Q |
96 |
tggtggattacttgaagtggatgccatattgttg |
129 |
Q |
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| T |
6250890 |
tggtggattacttgaagtggatgccatgttgttg |
6250923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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