View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_97 (Length: 201)
Name: NF0598_low_97
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 13744636 - 13744713
Alignment:
| Q |
14 |
aggtaactggtacctgagttttagtatgcatagaactgcaggactagcaaattaatatgattaccggaattcaaccaaa |
92 |
Q |
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| T |
13744636 |
aggtaactggtacctgagttttagtatgcatagaaatgtaggactagcaaattaat-tgattactggaattcaaccaaa |
13744713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 13744710 - 13744777
Alignment:
| Q |
113 |
caaattattgtgtgttccttccaccttagcatctcatgtgggttctgatattttcattgatgattata |
180 |
Q |
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| T |
13744710 |
caaattattgtgtgttccttccaccttagcatctattgtgggatctgatatttttattgatgattata |
13744777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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