View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_13 (Length: 514)
Name: NF0599_high_13
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_13 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42746329 - 42746550
Alignment:
| Q |
1 |
tggttgaacagcatgagtcaaagcccaaaccaaagcagttcttgaaatatattttgaagctttcactgagactataacaaccttagaggaagaactcatt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42746329 |
tggttgaacaacatgagtcaaagcccaaaccaaagcagttcttgaaatatattttgaagctttcactgcaactataacaaccttagaggaagaactcatt |
42746428 |
T |
|
| Q |
101 |
tcttctacataatgatgacccttttgtttattcatctcaagtttgacacttgacaagaaaaatcaattgctagaacccatctgaattgttaaatcaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42746429 |
tcttctacataatgatgacccttttgtttattcatcacaagtttgacacttgacaagaaaaatcaattgctagaacccatctgaattgttaaatcaacta |
42746528 |
T |
|
| Q |
201 |
cccagaagaaaagaaatgtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42746529 |
cccagaagaaaagaaatgtttc |
42746550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 273 - 422
Target Start/End: Original strand, 42746602 - 42746753
Alignment:
| Q |
273 |
tagaaatggacagtggacacaaacttcaaggtactttaatcaaacaatgttgccgttaaagcaaacnnnnnnnn--ttgtatcagtgtgacagaaacatt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42746602 |
tagaaatggacagtggacacaaacttcaaggtactttaatcaaacaatgttgccgttaaagcaaacaaaaaaaaaattgtatcagtgtgacagaaacatt |
42746701 |
T |
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| Q |
371 |
agaagaagaaaagaaagtgacattagaaacaacaacgttgaatgtgtgatga |
422 |
Q |
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| T |
42746702 |
agaagaagaaaagaaagtgacattagaaacaacaacgttgaatgtgtgatga |
42746753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 1719 - 1774
Alignment:
| Q |
115 |
atgacccttttgtttattcatctcaagtttgacacttgacaagaaaaatcaattgc |
170 |
Q |
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|||||| |||||| |||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
1719 |
atgaccattttgtctattcatctcaagttttccacttgataaggaaaatcaattgc |
1774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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