View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_high_20 (Length: 412)

Name: NF0599_high_20
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_high_20
NF0599_high_20
[»] chr6 (6 HSPs)
chr6 (69-252)||(24883264-24883447)
chr6 (308-412)||(24883160-24883264)
chr6 (290-386)||(32590713-32590809)
chr6 (290-386)||(32601184-32601280)
chr6 (82-136)||(32601043-32601097)
chr6 (82-136)||(32590572-32590626)
[»] chr1 (4 HSPs)
chr1 (77-160)||(34594086-34594169)
chr1 (313-386)||(34578555-34578628)
chr1 (313-386)||(34594259-34594332)
chr1 (313-386)||(35124248-35124321)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 24883447 - 24883264
Alignment:
Q  69 atcattgatcctcacctatcccatttatcttcgatatctgatgttgttctccaactatttcccacactcttcccccatattgatgggtcttctgctcccc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24883447 atcattgatcctcacctatcccatttatcttcgatatctgatgttgttctccaactatttcccacactcttcccccatattgacgggtcttctgctcccc 24883348  T
Q  169 tatatttgagaatgcaattaatcatgaaaaatatgcatgctaattatagttgcttctagcattataaattgttcttgagtgata 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24883347 tatatttgagaatgcaattaatcatgaaaaatatgcatgctaattatagtttcttctagcattataaattgttcttgagtgata 24883264  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 24883264 - 24883160
Alignment:
Q  308 atttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacctttctttgggggttacatcatt 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883264 atttgactcaccattcacacaaagagtagaagattggccttccagattgtactaaagcttcacccattcgtgggtacctttctttgggggttacatcatt 24883165  T
Q  408 attct 412  Q
    |||||    
T  24883164 attct 24883160  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 32590713 - 32590809
Alignment:
Q  290 tgagaaacatgatcaccaatttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 386  Q
    |||||||||| ||||| ||||  |||||||||||||||| |||| ||||||||| ||||||||||| || ||| ||||||| |||| |||| |||||    
T  32590713 tgagaaacattatcactaattcaactcaccattcacacacagagaagaagattggccttccagattttaataaggcttcactcattggtggatacct 32590809  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 32601184 - 32601280
Alignment:
Q  290 tgagaaacatgatcaccaatttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 386  Q
    |||||||||| |||||||||    ||||||||||||||| |||| ||||||||| ||||||||||| || ||| ||||||| |||| |||| |||||    
T  32601184 tgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacct 32601280  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 32601043 - 32601097
Alignment:
Q  82 acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact 136  Q
    |||||| ||| |||||||| ||||||  |||||||||||||||||||||||||||    
T  32601043 acctattccagttatcttcaatatctcctgttgttctccaactatttcccacact 32601097  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 32590572 - 32590626
Alignment:
Q  82 acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact 136  Q
    |||||| ||| |||||||  ||||||  |||||||||||||||||||||||||||    
T  32590572 acctatgccaattatctttaatatctcctgttgttctccaactatttcccacact 32590626  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 34594086 - 34594169
Alignment:
Q  77 tcctcacctatcccatttatcttcgatatctgatgttgttctccaactatttcccacactcttcccccatattgatgggtcttc 160  Q
    |||| |||||| ||| |||||||| |||||   ||||||||||||||||||||||||||| ||  ||||| ||| |||||||||    
T  34594086 tccttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttc 34594169  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 34578555 - 34578628
Alignment:
Q  313 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 386  Q
    |||||||||||||||| |||| ||||||||| |||||| || | || ||||||||||| |||| |||| |||||    
T  34578555 actcaccattcacacatagagaagaagattggccttccggagtttaataaagcttcactcattggtggatacct 34578628  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 34594259 - 34594332
Alignment:
Q  313 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 386  Q
    ||||||||||||||||  ||| |||||||||||||||||||||  | ||| ||||||| |||| | ||||||||    
T  34594259 actcaccattcacacattgagaagaagattgaccttccagatttcattaaggcttcactcattggcgggtacct 34594332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 35124248 - 35124321
Alignment:
Q  313 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 386  Q
    |||||||||||||||| |||| |||||||||  |||||||| | ||  || ||||||| |||| ||||||||||    
T  35124248 actcaccattcacacatagagaagaagattggtcttccagagtttaacaaggcttcactcattggtgggtacct 35124321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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