View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_22 (Length: 410)
Name: NF0599_high_22
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 67 - 395
Target Start/End: Original strand, 3041812 - 3042141
Alignment:
| Q |
67 |
atacaagagtgccacttctatgtttgtaattttttctttgaattctacaattcacaaaatgagacagatataggaattattgagcgtccacaaataagta |
166 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
3041812 |
atacaagagtgccacttctatgttcgtaattttttctttgaattctacaattcacaaaatgaaacagatataggaattattgaacgtccacaaataagta |
3041911 |
T |
|
| Q |
167 |
atattattggaccacacaaccatacataaaggataaagataagaagtcatactttcatgaagttaatagtcaaatctggaagtatatggataataaagtc |
266 |
Q |
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| T |
3041912 |
atattattcgaccacacaaccatacataaaggataaagataagaagtcatactttcatgaagttaatagtcaaatctggaagtatatggataataaagtc |
3042011 |
T |
|
| Q |
267 |
tactgcagaccccatgcattttgttacttaactctattatctggctggtaaattattggtagttagtaacgttgtcgttcagat-nnnnnnnnctttatg |
365 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
3042012 |
tactgtagaccccatgcattttgttacttaactctattatctggctggtaaattaatggtagttagtaacgttgtcgttcagataaaaaaaaactttatg |
3042111 |
T |
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| Q |
366 |
tatacatcataaattcatagtcatatccag |
395 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3042112 |
tatacatcataaattcatagtcatatccag |
3042141 |
T |
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