View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_23 (Length: 404)
Name: NF0599_high_23
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 30 - 400
Target Start/End: Complemental strand, 46380670 - 46380300
Alignment:
| Q |
30 |
caaatcactagaacaccaatgccaaggtaggaactatttaacgaggaaagcaaacaagaggagaagaaaatgtaaaatgaaacttcaggaagaaattctc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46380670 |
caaatcactagaacaccaatgccaaggtaggaactatttaacgaggaaagcaaacaagaggagaagaaaatgtaaaatgaaacttcaggaagaaattctc |
46380571 |
T |
|
| Q |
130 |
tttgtatagtttaaacatcaaccaattatatctctcctgaagcattttatggaattcagtcactgacgtctgacagcacagttcctttcaaatgaaagcc |
229 |
Q |
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| T |
46380570 |
tttgtatagtttaaacatcaaccaattatatctctcctgaagcattttatggaattcagtcactgacgtctgacagcacagttcctttcaaatgaaagcc |
46380471 |
T |
|
| Q |
230 |
cgataaaataatcaaatcagactgagttattaattagcaacaatctgttgtagactggaattgataaatgagtaaaataatgaagatattggttatacct |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46380470 |
cgataaaataatcaaatcagactgagttattaattagcaacaatctgttgtagactgcaattgataaatgagtaaaataatgaagatattggttatacct |
46380371 |
T |
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| Q |
330 |
tattctgaataacatctttgagaatagtagtaatccttgacaacgtctcaatctttttcttcatctcactc |
400 |
Q |
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| T |
46380370 |
tattctgaataacatctttgagaatagtagtaatccttgacaacgtctcaatctttttctccatttcactc |
46380300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 25755135 - 25755060
Alignment:
| Q |
325 |
taccttattctgaataacatctttgagaatagtagtaatccttgacaacgtctcaatctttttcttcatctcactc |
400 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||| |
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| T |
25755135 |
taccttattatgaataacatctttaagaatagtagtaatcctatccaaagtctcaatctttttctccatttcactc |
25755060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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