View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_24 (Length: 403)
Name: NF0599_high_24
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 29 - 403
Target Start/End: Complemental strand, 10280615 - 10280240
Alignment:
| Q |
29 |
catcatcatatatatcataagttcaagatagattttttcttccaaaccaagtttcttt-tgcacaaaagtcaatattcaatcaaatcacttgagttcttt |
127 |
Q |
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|||||||||| || | |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280615 |
catcatcatacatgttataaatacaagatagattttttcttccaaaccaagtttctttatgcacaaaagtcaatattcaatcaaatcacttgagttcttt |
10280516 |
T |
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| Q |
128 |
acctatcacaccgaccagatgttggtctagtaacttgagtttaattcattactattcaaaatgtgaaaattctaatatatgttggaaactttcatcaatc |
227 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280515 |
acctatcacaccaaccagatgttggtccagtaacttgagtttaattcattactattcaaaatgtgaaaattctaatatatgttggaaactttcatcaatc |
10280416 |
T |
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| Q |
228 |
attaaatagaaatttcagttcaattcaactacataactggctgaatattctaatcaataatctcagcacacatcacatcacacaacattagagtacataa |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280415 |
attaaatagaaatttcagttcaattcaactacataactggccgaatattctaatcaataatctcagcacacatcacatcacacaacattagagtacataa |
10280316 |
T |
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| Q |
328 |
ttattctcaaataaataacataacacacataaaactaaaccgaattaatcttacaagacacataaagcacaaacaa |
403 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
10280315 |
ttattctcaaataaataacataacacgcataaaactaaacctaagtaatcttacaagacacataaagcacaaacaa |
10280240 |
T |
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