View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_3 (Length: 773)
Name: NF0599_high_3
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 9152530 - 9152109
Alignment:
| Q |
1 |
attaataatagttgaggaaaaccctaattctctcaaaatgcttcctaaaccaccttcatcttcccattgaccaaattatgaacaaatcttcatcctaacc |
100 |
Q |
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| T |
9152530 |
attaataatatttgaggaaaaccctaattctcacaaaatgcttcctaaaccaccttcatcttcccattcaccaaattatgaacaaatcttcatcctaacc |
9152431 |
T |
|
| Q |
101 |
tttcttttcaccattaaaaaacacacccaaaatatt--ttttctaatcttccatatgcttacctctcattctaccatattcattaactcacaacttcacc |
198 |
Q |
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| T |
9152430 |
ttccttttcaccattaaaaaatccaaccaaaatattttttttctcatcttc--tacgcttaccactcatctttccatatttatcaactcacaacttcacc |
9152333 |
T |
|
| Q |
199 |
caaacgaaaaattaccttagactcnnnnnnnntcaagccaattctacctattctccaaactcattaataaatttatcacaattcaacccattctccacca |
298 |
Q |
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| T |
9152332 |
caaacgaaaaattaccttagactcatcaaatatcaagacaaacctacatattctcaaaactccctaa-caatttatcacaattcaacccattcaccacca |
9152234 |
T |
|
| Q |
299 |
tatcaacttacgttcaccataacaacgaactattccaag------------ttatgaagtcaacaagttcatggaaaacataccaccactttcacaccac |
386 |
Q |
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| T |
9152233 |
tatcaatttaccatcagcataacaaccaactattccaagcaaagctcctacttatgaaatcaactagttcgtgggaaacataccaccaccttcacaccat |
9152134 |
T |
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| Q |
387 |
ggacaaaattgatccgggagactcc |
411 |
Q |
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| T |
9152133 |
ggacaaaattgatccgggagactcc |
9152109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 465 - 521
Target Start/End: Complemental strand, 9152052 - 9151996
Alignment:
| Q |
465 |
gagtcaagcttgttatgattagttattgttgtgttagtcatgctgttctagtgtttt |
521 |
Q |
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| T |
9152052 |
gagtcaagcttgttacgattagttattgttttgttagtcatgctgttctagtgtttt |
9151996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 649 - 712
Target Start/End: Complemental strand, 9151994 - 9151928
Alignment:
| Q |
649 |
aatgcatttctcaagggttcaaaggaggaattgaca---agaaataagaaaatcatctgatttgcta |
712 |
Q |
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| T |
9151994 |
aatgtatttcttaagggttcaaaggaggaattgacaagaagaaataagaaaatcatctgatgtgcta |
9151928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 29892436 - 29892367
Alignment:
| Q |
70 |
accaaattatgaacaaatcttcatcctaacctttcttttcaccatta-aaaaacacacccaaaatatttt |
138 |
Q |
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| T |
29892436 |
accaaattatgaacaaatcttcatcctaaaattcctcttcacaattataaaaacacacccaaaatctttt |
29892367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 600 - 680
Target Start/End: Original strand, 30590592 - 30590672
Alignment:
| Q |
600 |
attgaccggaatcccaaagtctaagttctacttcaggtagacaaagtgaaatgcatttctcaagggttcaaaggaggaatt |
680 |
Q |
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| T |
30590592 |
attgatcggaatcccaaagtctaagttccacttcttgtagataaagtgaaatgcattgctcaacggttcaaaggaggaatt |
30590672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 681
Target Start/End: Complemental strand, 30698229 - 30698184
Alignment:
| Q |
636 |
gtagacaaagtgaaatgcatttctcaagggttcaaaggaggaattg |
681 |
Q |
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||||||||||||||||||||| | ||| ||| |||||||||||||| |
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| T |
30698229 |
gtagacaaagtgaaatgcattgcacaacggtccaaaggaggaattg |
30698184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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