View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_38 (Length: 338)
Name: NF0599_high_38
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 24978335 - 24978011
Alignment:
| Q |
1 |
ttgtggacaacacaaactgtgagttttctagtgaattgggaaaaaggaagccccaatttgttgttcaattagtggaatttgtgagtgcttctgctaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24978335 |
ttgtggacaacacaaactgtgagttttctagtgaattgggaaaaaggaagccacgatttgttgttcaattagtggaatttgtgagtgcttctgctaagat |
24978236 |
T |
|
| Q |
101 |
gccttttactaatagattggtggaacgtgtgactgttactgaaatgtcagaaccaaacaatggaaaaattcagaaagctaatagttgtaagcattgctca |
200 |
Q |
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||||||||| |||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24978235 |
gccttttacaaatagattggtggaacctgtgactattactgaaatgttaggaccaaacaatggaaaaattcagaaagctaatagttgtaagcattgctca |
24978136 |
T |
|
| Q |
201 |
gaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
24978135 |
gaggcaggcaagaaaattgtccatattcttagtaaattttggggagatgtggtggactttgaccacacaacagatggcactttggatcctgacactatta |
24978036 |
T |
|
| Q |
301 |
cagtgaaaagatgaatatgcaccct |
325 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
24978035 |
gagtgaaaagatgaatatgcaccct |
24978011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 97 - 328
Target Start/End: Complemental strand, 16140777 - 16140551
Alignment:
| Q |
97 |
agatgccttttactaatagattggtggaacgtgtgactgttactgaaatgtcagaaccaaacaatggaaaaattcagaaagctaatagttgtaagcattg |
196 |
Q |
| |
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|||||||| ||||| ||| ||||||||||| |||||||||||||||| ||| |||||||||||| |||| |||| |||||||||| | ||||||||| |
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| T |
16140777 |
agatgcctgttacttataaattggtggaacctgtgactgttactgaagtgttagaaccaaacaaaggaaggtttcataaagctaataactctaagcattg |
16140678 |
T |
|
| Q |
197 |
ctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacact |
296 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||| ||| ||| |||| ||||||||||||| |
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| T |
16140677 |
ctcagaggcaagcaagaaaagtgtccaaattcttagtaaattttggggtgatgtggtggactctg---acactacaaatgccactatggatcctgacac- |
16140582 |
T |
|
| Q |
297 |
ataacagtgaaaagatgaatatgcaccctatg |
328 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
16140581 |
-cgacaaagaaaagatgaatatgcaccctatg |
16140551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 9057558 - 9057815
Alignment:
| Q |
67 |
aattagtggaatttgtgagtgcttctgctaagatgcctt----ttactaatagattggtggaacgtgtgactgttactgaaatgtcagaaccaaacaatg |
162 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||| ||| ||||| | | ||||| ||||||||||||| || ||| || |||| |||| | |
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| T |
9057558 |
aattagaggaatctgtgagtgtttctgctaagatgcctagctattattaataaaatcaaggaacctgtgactgttactcaagtgttaggaccagacaaag |
9057657 |
T |
|
| Q |
163 |
gaaaaattcagaaagctaatagttgtaagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctga |
262 |
Q |
| |
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||| |||||||||||||||| | ||||||||| ||||||||| |||||||| |||||| ||||||| ||||| ||| || ||||||||||||||| |
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| T |
9057658 |
gaaggattcagaaagctaataactctaagcattgttcagaggcatgcaagaaaagtgtccaaattcttaataaatgttgaggttatgtggtggactctg- |
9057756 |
T |
|
| Q |
263 |
ccacacaacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccct |
325 |
Q |
| |
|
||||||||||||||| | ||||||||||||| | ||| |||||||||||||||||||||| |
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|
| T |
9057757 |
--acacaacagatggcattatggatcctgacac--tgacaatgaaaagatgaatatgcaccct |
9057815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 10502268 - 10502149
Alignment:
| Q |
204 |
gcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacag |
303 |
Q |
| |
|
|||| |||||||| |||| | |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |||| |||| |||||||| | |||| |
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| T |
10502268 |
gcagccaagaaaagtgtcaaaattcttagcaaattttcgggggatgtggtggactctaaccacacaacagatgacactgtggaccctgacac--tgacag |
10502171 |
T |
|
| Q |
304 |
tgaaaagatgaatatgcaccct |
325 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
10502170 |
tgaaaagatgaatatgcaccct |
10502149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 4922567 - 4922665
Alignment:
| Q |
225 |
attcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccc |
324 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| |||||| |||||| | || |||||||||||||||||||||| |
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| T |
4922567 |
attcttagtaaattttggggcgatgtggaggactctgaccacacaatagatgacactatggatcatgacac--tgacggtgaaaagatgaatatgcaccc |
4922664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 32230277 - 32230158
Alignment:
| Q |
204 |
gcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacag |
303 |
Q |
| |
|
|||| |||||||| || ||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| | |||||| | ||| |
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| T |
32230277 |
gcagccaagaaaagtgcccaaattcttagcaaattttggggggatgtggtggattctgaccacacgacagatggcactatggaccttgacac--tgacac |
32230180 |
T |
|
| Q |
304 |
tgaaaagatgaatatgcaccct |
325 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
32230179 |
tgaaatgatgaatatgcaccct |
32230158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 30426421 - 30426307
Alignment:
| Q |
209 |
caagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaa |
308 |
Q |
| |
|
|||||||| || ||| |||||||| ||||||||| | || |||||||| ||||||||||| |||||||||||| |||| | |||||| | ||| ||||| |
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|
| T |
30426421 |
caagaaaagtgcccaaattcttagcaaattttggagggacgtggtggattctgaccacacgacagatggcactatggaccttgacac--tgacactgaaa |
30426324 |
T |
|
| Q |
309 |
agatgaatatgcaccct |
325 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30426323 |
tgatgaatatgcaccct |
30426307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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