View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_47 (Length: 284)
Name: NF0599_high_47
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 20125118 - 20124927
Alignment:
| Q |
1 |
caaactacaaattgattgtt-ccttacaaacatgtcgtatagttacaaattaaaatcttaaaaaccagcttctctgaatcatttagagcaccggtaaatg |
99 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
20125118 |
caaactacaaattgattgtttccttacaaacatgtcgtatagttacaaattaaaatcttaaaaaccagcttctctcaatcatttagggcaccggtaaatg |
20125019 |
T |
|
| Q |
100 |
cattaaaactgacaggctaaagacctatcttaaatgccataaaaaatgtatattgctattagtatctaacatcaagaatcagaagcctatga |
191 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
20125018 |
cattaaaactgacaggcttaagacctatcttaaatgacataaaaaatgtatattactattagtatctaacatcaagaatcagaagcctatga |
20124927 |
T |
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