View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_51 (Length: 279)
Name: NF0599_high_51
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_51 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 12206 - 12123
Alignment:
| Q |
29 |
attcaattcatcaagagccatattaaaatcccttagtattatctctttaatcgccacactgtttctccgtcccctttgatggca |
112 |
Q |
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| T |
12206 |
attcaattcatcaagagccatattaaaatcccttagtattttccctttaatcgccacactgtttctccgtaccctttgatggca |
12123 |
T |
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Target: scaffold0370; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 12107 - 12043
Alignment:
| Q |
161 |
ttatgagtatcatttcatattcaaatttattatcatggatgnnnnnnnttcgaaatatcaatttc |
225 |
Q |
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| T |
12107 |
ttatgagtatcatttcatattcaaatttattatcatggatgaaaaaaattcgaaatatcaatttc |
12043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 38633227 - 38633158
Alignment:
| Q |
29 |
attcaattcatcaagagccatattaaaatcccttagtattatctctttaatcgccacactgtttctccgt |
98 |
Q |
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| T |
38633227 |
attcaactcatcaagagccatatataaatccctaagtatcttctccttactcgccacgcggtttctccgt |
38633158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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