View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_high_54 (Length: 268)

Name: NF0599_high_54
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_high_54
NF0599_high_54
[»] chr8 (16 HSPs)
chr8 (1-64)||(1329578-1329641)
chr8 (61-150)||(20050109-20050198)
chr8 (70-168)||(13084782-13084880)
chr8 (70-180)||(24085809-24085920)
chr8 (60-181)||(31873180-31873302)
chr8 (61-176)||(22890124-22890239)
chr8 (60-180)||(22890276-22890397)
chr8 (69-148)||(9499641-9499720)
chr8 (60-142)||(9499918-9500000)
chr8 (61-139)||(10794201-10794279)
chr8 (97-143)||(31872950-31872996)
chr8 (60-139)||(11291052-11291131)
chr8 (64-149)||(2535864-2535949)
chr8 (73-181)||(4405941-4406050)
chr8 (64-105)||(10749866-10749907)
chr8 (61-142)||(11291232-11291312)
[»] chr5 (11 HSPs)
chr5 (61-150)||(12904780-12904869)
chr5 (61-177)||(14848992-14849109)
chr5 (70-168)||(15645007-15645105)
chr5 (61-130)||(5326352-5326421)
chr5 (61-142)||(15644750-15644831)
chr5 (60-150)||(14848764-14848854)
chr5 (64-164)||(30096841-30096941)
chr5 (64-168)||(38475294-38475398)
chr5 (60-131)||(5326082-5326153)
chr5 (64-167)||(35920480-35920583)
chr5 (64-104)||(35920257-35920297)
[»] chr2 (12 HSPs)
chr2 (61-167)||(17266424-17266530)
chr2 (61-180)||(11721372-11721492)
chr2 (61-180)||(11689567-11689687)
chr2 (61-142)||(16105578-16105659)
chr2 (60-147)||(6848050-6848137)
chr2 (76-146)||(17266647-17266717)
chr2 (70-139)||(11689762-11689831)
chr2 (60-150)||(6846809-6846899)
chr2 (60-164)||(11349504-11349608)
chr2 (61-139)||(11721219-11721297)
chr2 (70-163)||(43741976-43742069)
chr2 (70-166)||(3653377-3653472)
[»] chr1 (12 HSPs)
chr1 (60-150)||(9443597-9443687)
chr1 (60-146)||(42267328-42267414)
chr1 (60-168)||(10304150-10304258)
chr1 (60-180)||(13245875-13245996)
chr1 (60-168)||(10303948-10304056)
chr1 (61-150)||(22103819-22103908)
chr1 (61-180)||(21444620-21444740)
chr1 (60-139)||(19227183-19227262)
chr1 (70-151)||(42267512-42267593)
chr1 (61-168)||(22103635-22103742)
chr1 (60-154)||(13246056-13246150)
chr1 (73-181)||(19017910-19018019)
[»] chr3 (13 HSPs)
chr3 (60-167)||(44654799-44654906)
chr3 (60-168)||(14634047-14634155)
chr3 (73-139)||(14633890-14633956)
chr3 (60-150)||(20704640-20704730)
chr3 (70-168)||(54317926-54318023)
chr3 (60-143)||(26479095-26479178)
chr3 (61-154)||(26479234-26479327)
chr3 (70-150)||(20704465-20704545)
chr3 (61-150)||(30380872-30380961)
chr3 (61-132)||(30381075-30381146)
chr3 (61-151)||(44654643-44654732)
chr3 (126-181)||(9367832-9367888)
chr3 (64-104)||(35712073-35712113)
[»] chr7 (11 HSPs)
chr7 (60-168)||(15714587-15714695)
chr7 (64-164)||(20425507-20425607)
chr7 (60-168)||(13311328-13311436)
chr7 (72-164)||(21724428-21724523)
chr7 (60-139)||(23608984-23609063)
chr7 (60-154)||(15714421-15714514)
chr7 (70-127)||(22539328-22539385)
chr7 (60-124)||(23608833-23608897)
chr7 (125-181)||(3914228-3914285)
chr7 (64-104)||(17886849-17886889)
chr7 (64-164)||(30127470-30127569)
[»] chr6 (6 HSPs)
chr6 (60-164)||(13378550-13378654)
chr6 (60-149)||(1215180-1215269)
chr6 (64-168)||(26463208-26463312)
chr6 (60-139)||(1215032-1215111)
chr6 (64-180)||(26464481-26464598)
chr6 (64-168)||(28498320-28498424)
[»] scaffold0100 (2 HSPs)
scaffold0100 (61-163)||(31206-31308)
scaffold0100 (70-139)||(31055-31124)
[»] scaffold0182 (2 HSPs)
scaffold0182 (70-164)||(31660-31753)
scaffold0182 (72-164)||(33066-33161)
[»] scaffold0181 (1 HSPs)
scaffold0181 (59-168)||(9398-9507)
[»] chr4 (5 HSPs)
chr4 (60-180)||(11857917-11858038)
chr4 (61-139)||(7280235-7280313)
chr4 (198-257)||(56014934-56014990)
chr4 (60-150)||(11858102-11858193)
chr4 (64-168)||(43155791-43155895)
[»] scaffold0291 (1 HSPs)
scaffold0291 (60-131)||(6524-6595)
[»] scaffold0027 (1 HSPs)
scaffold0027 (91-150)||(14103-14162)
[»] scaffold0220 (1 HSPs)
scaffold0220 (70-142)||(23266-23338)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1329641 - 1329578
Alignment:
Q  1 catgaaagattgaaagctatatttccttcttgtagatttttattattgcacattctccccaaat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1329641 catgaaagattgaaagctatatttccttcttgtagatttttattattgcacattctccccaaat 1329578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 20050109 - 20050198
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| || |||| ||| |||||||||||||||| |||||||||||||||    
T  20050109 aaataggggtcatttaaaaattggtccatgtattccttaattctggcattttgccctgccaaaatttaatcacttaaaatttcgtccctc 20050198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 13084880 - 13084782
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcactgc 168  Q
    ||||||||||||||||| ||||||||||||||| ||  | |||| ||| |||||||||||||||| |||| || ||||| ||||| ||||||| |||||    
T  13084880 tcatttaaaaattggtccatgtattccttaatcttggaattttgccctgccaaaatttaatcacttaaaaattggtcccccaacccaattaattactgc 13084782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 24085809 - 24085920
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcactg-c 168  Q
    |||| |||||| |||||  |||||| ||||||||||||| |||||||| ||||||||||||| || ||||||| |||||||  || | |||||||||| |    
T  24085809 tcatataaaaaatggtccttgtatttcttaatcctgacattttgtcctgccaaaatttaatcgcttaaaattttgtccctctccccacttaatcactgtc 24085908  T
Q  169 acatcactaatt 180  Q
    || |||||||||    
T  24085909 acgtcactaatt 24085920  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 31873302 - 31873180
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    |||||| || ||||||||||| |||||  | ||||| |||||| || ||||||| |||||||||||||||||| | ||||||| || ||||  || | ||    
T  31873302 caaatatgggtcatttaaaaaatggtccttttattcgttaatcttggcaatttgccctcccaaaatttaatcatttaaaattttgttcctcttcccactt 31873203  T
Q  160 aatcactgc-acatcactaattt 181  Q
    ||||||||| |||||||||||||    
T  31873202 aatcactgctacatcactaattt 31873180  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 22890124 - 22890239
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||| ||||||||||| |||||  |||||||||||||| ||||| |||||||   ||||||||||||||| |||| || |||||||| || | |||    
T  22890124 aaataggggtcatttaaaaaatggtct-tgtattccttaatcatgacattttgtcccgtcaaaatttaatcacttaaaaattggtccctcagcccagtta 22890222  T
Q  161 atcactg-cacatcact 176  Q
    || |||| |||||||||    
T  22890223 atgactgccacatcact 22890239  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 22890397 - 22890276
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| ||||||||||  ||||   |||||||||||||| ||||| |||  |||  |||||| |||||||| ||||||| |||||||  || | ||    
T  22890397 caaataggggtcatttaaaacatggtacctgtattccttaatcttgacatttttccctggcaaaatctaatcacttaaaattttgtccctcttcccactt 22890298  T
Q  160 aatcactg-cacatcactaatt 180  Q
    |||||||| |||||||||||||    
T  22890297 aatcactgtcacatcactaatt 22890276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 9499641 - 9499720
Alignment:
Q  69 atcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccc 148  Q
    |||||||||||| ||||| |||||||||||||| ||| || |||||| || |||| |||||||| | ||||||| |||||    
T  9499641 atcatttaaaaaatggtccatgtattccttaattctggcattttgtcatcgcaaagtttaatcatttaaaatttggtccc 9499720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 9500000 - 9499918
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaattt 142  Q
    ||||||||| ||  ||||||| ||||  ||||||| ||||||||||||| |||  |||||||||||||||||| | |||||||    
T  9500000 caaataggggtcgattaaaaaatggttcatgtatttcttaatcctgacattttaccctcccaaaatttaatcatttaaaattt 9499918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 10794201 - 10794279
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    |||||||||||||||||||| || ||| | |||||||||||  ||||| ||| |||| ||||| |||||||||| ||||    
T  10794201 aaatagggatcatttaaaaaatgatcattatattccttaattatgacattttatcctgccaaagtttaatcacttaaaa 10794279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 31872950 - 31872996
Alignment:
Q  97 ttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttc 143  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||    
T  31872950 ttaatcctgacaatttatcctcccaaaatttaatcatttaaaatttc 31872996  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 11291052 - 11291131
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    ||||||||  ||||||||||| ||||   |||||||||||||||||| | |||| | | |||||||||||||||| ||||    
T  11291052 caaataggagtcatttaaaaaatggttcttgtattccttaatcctgatattttgccatgccaaaatttaatcacttaaaa 11291131  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 2535949 - 2535864
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccct 149  Q
    ||||| |||||||||||||||||  |||| || ||||||||| ||| ||  |||  |||| |||||||| | ||||||||||||||    
T  2535949 taggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattacccttacaaagtttaatcatttaaaatttcgtccct 2535864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 4406050 - 4405941
Alignment:
Q  73 tttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcactg-caca 171  Q
    |||||||||||||| |||||||  ||||||||  ||||||  |||  |||  |||||||| | |||||||||||||||  || | |||||||||| |||     
T  4406050 tttaaaaattggtccatgtatttgttaatccttgcaatttacccttgcaatgtttaatcatttaaaatttcgtccctcttcccacttaatcactgtcacg 4405951  T
Q  172 tcactaattt 181  Q
    ||||||||||    
T  4405950 tcactaattt 4405941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 10749907 - 10749866
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctg 105  Q
    ||||||||||||||||||||||| ||||| || |||||||||    
T  10749907 tagggatcatttaaaaattggtccatgtaatcgttaatcctg 10749866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 11291312 - 11291232
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaattt 142  Q
    |||||||| ||||||||||| ||||| |||||||| ||||| ||| || |||| | |  ||||||||||||||| |||||||    
T  11291312 aaataggggtcatttaaaaaatggtctatgtattctttaat-ctggcattttgccttatcaaaatttaatcacttaaaattt 11291232  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 12904780 - 12904869
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    |||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  12904780 aaatagggatcatttaaaaaatggtccctgtattcgttaatcctgacaatttgtcctcccaaaatttaataatttaaaatttcgtccctc 12904869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 14849109 - 14848992
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||||||||||||||| ||||| ||||||||||||||| || || |||| ||| |||||||||||||| | ||||||| |||||||| || | |||    
T  14849109 aaatagggatcatttaaaaaatggtccatgtattccttaatcgtggcattttgccctaccaaaatttaatcatttaaaatttggtccctcaccccactta 14849010  T
Q  161 atcactg-cacatcacta 177  Q
    ||||||| ||||||||||    
T  14849009 atcactgccacatcacta 14848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 15645105 - 15645007
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcactgc 168  Q
    ||||||||||||||||  |||||||| |||||||||||| |||| |||||||||||||||||| | ||||||||||||||  ||| | |||||||||||    
T  15645105 tcatttaaaaattggtttatgtattcgttaatcctgacattttgccctcccaaaatttaatcatttaaaatttcgtccctacacccacttaatcactgc 15645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 5326421 - 5326352
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaat 130  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||| || || |||||||||||||||||||||    
T  5326421 aaataggggtcatttaaaaaatggtccatgcattccttaatcatggcattttgtcctcccaaaatttaat 5326352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 15644750 - 15644831
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaattt 142  Q
    |||||| | ||||||||||| || ||   ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  15644750 aaatagaggtcatttaaaaaatgatccccgtattccttaatcctgacattttttcctcccaaaatttaatcattcaaaattt 15644831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 14848764 - 14848854
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    ||||||||||||||||||||| ||||   || |||||||||||||  || |||  |||||||||||||||||| | ||||||| |||||||    
T  14848764 caaatagggatcatttaaaaaatggtttgtgcattccttaatccttgcatttttccctcccaaaatttaatcatttaaaatttggtccctc 14848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 30096941 - 30096841
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| ||||||||||| |||||  ||||| | ||||| ||| ||||||  ||||| |||| ||||||||| |||| || ||||||||||| | ||||||    
T  30096941 taggggtcatttaaaaaatggtccctgtatccattaattctggcaatttaccctcctaaaaattaatcacttaaaaattggtccctcaacctagttaatc 30096842  T
Q  164 a 164  Q
    |    
T  30096841 a 30096841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 38475398 - 38475294
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| || |||||||||||||| ||||| || ||||||||||||||||  |||  ||   |||||||| | |||||||||||||||  || | ||||||    
T  38475398 taggggtcgtttaaaaattggtccatgtaatcgttaatcctgacaatttacccttgcattgtttaatcatttaaaatttcgtccctctccccacttaatc 38475299  T
Q  164 actgc 168  Q
    |||||    
T  38475298 actgc 38475294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 5326082 - 5326153
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatc 131  Q
    ||||||||| ||||||||||| |||||  || |||||||||||||| || |||| |||  ||||||||||||    
T  5326082 caaataggggtcatttaaaaaatggtccctgcattccttaatcctggcattttgccctttcaaaatttaatc 5326153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 35920583 - 35920480
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| || ||||||||||||||  |||| ||  ||||||||||||||| |||| |||   |||||||| | |||||||||||||||  || | ||||||    
T  35920583 taggggtcgtttaaaaattggtccctgtaatcgctaatcctgacaatttatccttccattgtttaatcatttaaaatttcgtccctctccccacttaatc 35920484  T
Q  164 actg 167  Q
    ||||    
T  35920483 actg 35920480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 35920257 - 35920297
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcct 104  Q
    |||||||| |||||||||||||||||||||||  |||||||    
T  35920257 tagggatcgtttaaaaattggtcaatgtattcgctaatcct 35920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 17266424 - 17266530
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||  ||| |||||||||||||| | ||||||| |||||||  || | |||    
T  17266424 aaatagggatcatttaaaaaatggtcaatgtattcgtttatcctgacaattttcccttccaaaatttaatcatttaaaatttggtccctctccccactta 17266523  T
Q  161 atcactg 167  Q
    |||||||    
T  17266524 atcactg 17266530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 11721492 - 11721372
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||| |||||||||||||| ||  ||||||| |||||||||||| ||| |||| |||||||||||||||| ||||||||||| |||  || | |||    
T  11721492 aaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcacttaaaatttcgtctctctccccactta 11721393  T
Q  161 atcactg-cacatcactaatt 180  Q
    ||||||| ||| |||||||||    
T  11721392 atcactgtcacgtcactaatt 11721372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 11689567 - 11689687
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||| |||||||||||||| ||  ||||||| ||||||| | || |||||||| |||||||||||||||| |||||||||||| ||  || | |||    
T  11689567 aaataggggtcatttaaaaattgatccctgtattctttaatcccggcattttgtcctgccaaaatttaatcacttaaaatttcgtccatctccccactta 11689666  T
Q  161 atcactg-cacatcactaatt 180  Q
    ||||||| ||| |||||||||    
T  11689667 atcactgccacgtcactaatt 11689687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 16105578 - 16105659
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaattt 142  Q
    ||||||||  |||||||||| |||||  || ||||||||||||||||| |||| |||||||||||||||||| | |||||||    
T  16105578 aaataggggccatttaaaaaatggtccctgcattccttaatcctgacattttgccctcccaaaatttaatcatttaaaattt 16105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 6848137 - 6848050
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtcc 147  Q
    |||||| || |||||||||||||||||| || |||| |||||||||||| |||||||    |||||||||||| | ||||||||||||    
T  6848137 caaataagggtcatttaaaaattggtcattgaattcgttaatcctgacattttgtccctgaaaaatttaatcatttaaaatttcgtcc 6848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 17266717 - 17266647
Alignment:
Q  76 aaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtc 146  Q
    ||||| |||||  ||||||| |||||| |||||||||| |||||||||||||||||| | |||||||||||    
T  17266717 aaaaaatggtctctgtattcgttaatcttgacaatttgccctcccaaaatttaatcatttaaaatttcgtc 17266647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 11689831 - 11689762
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    ||||||||||| |||||  ||||||| ||||||||  ||||||||||| |||||||||||||||| ||||    
T  11689831 tcatttaaaaaatggtctttgtattctttaatcctagcaatttgtcctgccaaaatttaatcacttaaaa 11689762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 6846809 - 6846899
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    ||||||||| |||||||||||||||||  || |||| ||||||| | || |||||||   ||||||| ||||| | |||||||||||||||    
T  6846809 caaataggggtcatttaaaaattggtccttgaattcgttaatccgggcattttgtccctgcaaaattgaatcatttaaaatttcgtccctc 6846899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 11349608 - 11349504
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||  |||||||||| ||| ||  || |||| |||||||||||| ||||| |    |||||||||||| | ||||||||||||||||||| | ||    
T  11349608 caaataggagtcatttaaaatttgatctttgaattcgttaatcctgacagtttgtacctataaaatttaatcatttaaaatttcgtccctcaacccagtt 11349509  T
Q  160 aatca 164  Q
    |||||    
T  11349508 aatca 11349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 11721219 - 11721297
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    |||||||| ||||||||||| || ||  ||||||| ||||||||  || |||| ||| |||||||||||||||| ||||    
T  11721219 aaataggggtcatttaaaaaatgatccttgtattctttaatcctagcattttgccctgccaaaatttaatcacttaaaa 11721297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 43742069 - 43741976
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||||||||||||||| ||||| || ||||||||||||| ||  |||  |||| |||||||| | |||| ||  |||||||||| | ||||||    
T  43742069 tcatttaaaaattggtccatgtaatcattaatcctgacaaattacccttgcaaagtttaatcatttaaaaattgatccctcaacccagttaatc 43741976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 3653472 - 3653377
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcact 166  Q
    ||||||||||||||||| ||||| || |||||| || ||| ||  |||  |||| |||||||| | |||||||||||||||  |||| |||||||||    
T  3653472 tcatttaaaaattggtccatgtaatcgttaatc-tggcaaattacccttgcaaagtttaatcatttaaaatttcgtccctcttccaagttaatcact 3653377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 9443597 - 9443687
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    ||||||||| ||||||||||| |||||  ||||||||||||||||| || ||||||||||||||||||||||| | ||||||| |||||||    
T  9443597 caaataggggtcatttaaaaaatggtctctgtattccttaatcctggcattttgtcctcccaaaatttaatcatttaaaatttggtccctc 9443687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 42267328 - 42267414
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtc 146  Q
    ||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||| | || ||||||||    
T  42267328 caaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatcatttaatatttcgtc 42267414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 10304258 - 10304150
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||||| | |||||||||||||||| | ||||||||||| |||  || | ||    
T  10304258 caaataggggtcatttaaaaaatggtcaatgtattcgttaattctggcaatttgccttcccaaaatttaatcatttaaaatttcgtctctctccccactt 10304159  T
Q  160 aatcactgc 168  Q
    |||||||||    
T  10304158 aatcactgc 10304150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 13245875 - 13245996
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||  |||||||||||||||||  ||||||||||||||||| || |||  ||| |||||||||||||||| ||||||| |||||||  || | ||    
T  13245875 caaataggattcatttaaaaattggtccttgtattccttaatcctggcattttaccctgccaaaatttaatcacttaaaattttgtccctctccccactt 13245974  T
Q  160 aatcactg-cacatcactaatt 180  Q
    |||||||| ||| |||||||||    
T  13245975 aatcactgtcacgtcactaatt 13245996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 10303948 - 10304056
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||  ||||||||||| || || |||||||| ||||||||| ||||||| ||| |||||||||||||| | |||||||||||||||  || | ||    
T  10303948 caaataggagtcatttaaaaaatgatctatgtattcgttaatcctggcaatttgcccttccaaaatttaatcatttaaaatttcgtccctctccccactt 10304047  T
Q  160 aatcactgc 168  Q
    |||||||||    
T  10304048 aatcactgc 10304056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 22103908 - 22103819
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    |||||||| ||||||||||| ||||| |||||||  |||||||||  | |||| |||  ||||||||||||||| |||||||||||||||    
T  22103908 aaataggggtcatttaaaaaatggtccatgtattttttaatcctgctattttgccctgtcaaaatttaatcacttaaaatttcgtccctc 22103819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 21444620 - 21444740
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||||| |||||||||||||||  ||||||| |||||  || || ||| ||||  ||||||||||||||| |||||||||||| ||  || | |||    
T  21444620 aaatagggattatttaaaaattggtccttgtattctttaattttggcattttatcctatcaaaatttaatcacttaaaatttcgtccatctccccactta 21444719  T
Q  161 atcactg-cacatcactaatt 180  Q
    ||||||| ||| |||||||||    
T  21444720 atcactgccacgtcactaatt 21444740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 19227262 - 19227183
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    |||||| || ||||||||||| | |||  |||||||||||||||||||| |||| ||| |||||||||||||||| ||||    
T  19227262 caaataagggtcatttaaaaaatagtccttgtattccttaatcctgacattttgccctgccaaaatttaatcacttaaaa 19227183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 42267593 - 42267512
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctca 151  Q
    ||||||||||| |||||  ||||||||||||||||| || |||| ||| ||||||||||||||||  ||| || ||||||||    
T  42267593 tcatttaaaaaatggtctctgtattccttaatcctggcattttgccctaccaaaatttaatcacttcaaaattggtccctca 42267512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 22103635 - 22103742
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    |||||||| ||||||||||| ||||| |||||||  |||||| || || |||| ||| |||||||| ||||||| |||| || |||||||| || | |||    
T  22103635 aaataggggtcatttaaaaaatggtccatgtattttttaatcttggcattttgcccttccaaaattgaatcacttaaaaattggtccctcagcccagtta 22103734  T
Q  161 atcactgc 168  Q
    || |||||    
T  22103735 atgactgc 22103742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 13246150 - 13246056
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaacc 154  Q
    |||||| | |||||||||||| ||||| |||||||||||||||||  || |||  ||| |||||||||||| ||  |||| || |||||||||||    
T  13246150 caaatatgaatcatttaaaaaatggtccatgtattccttaatcctagcatttttccctaccaaaatttaatgacataaaaattggtccctcaacc 13246056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 19018019 - 19017910
Alignment:
Q  73 tttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcactg-caca 171  Q
    |||||||||||||| ||||||||  |||||||| ||||||  |||  ||  ||||||||| | ||||||| |||||||  || | |||||||||| | ||    
T  19018019 tttaaaaattggtccatgtattcgctaatcctggcaatttacccttgcattatttaatcatttaaaattttgtccctcttcccacttaatcactgccgca 19017920  T
Q  172 tcactaattt 181  Q
    ||||||||||    
T  19017919 tcactaattt 19017910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 44654906 - 44654799
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| ||||||||||||| ||| |||||||||| |||| || || |||| ||| |||||||||||||||| |||||||||||||||  || | ||    
T  44654906 caaataggggtcatttaaaaatttgtccatgtattcctaaatcatggcattttggcctgccaaaatttaatcacttaaaatttcgtccctctccccattt 44654807  T
Q  160 aatcactg 167  Q
    ||||||||    
T  44654806 aatcactg 44654799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 14634155 - 14634047
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| |||||||||||||||||  ||||||||||||||  | || |||| ||| |||||||||||||||| ||| |||||||| ||  || | ||    
T  14634155 caaataggggtcatttaaaaattggtccctgtattccttaatcgaggcattttgccctgccaaaatttaatcactaaaactttcgtccttctccccactt 14634056  T
Q  160 aatcactgc 168  Q
    |||||||||    
T  14634055 aatcactgc 14634047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 14633890 - 14633956
Alignment:
Q  73 tttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    |||||||| ||||| |||||||| |||||||||||| |||||||| |||||||||||||||| ||||    
T  14633890 tttaaaaaatggtctatgtattctttaatcctgacattttgtcctaccaaaatttaatcacttaaaa 14633956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 20704730 - 20704640
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    ||||||||||| ||||||||| ||||  ||||||| ||||||||||  | ||||  || |||||||||||||||| |||||||||||||||    
T  20704730 caaatagggattatttaaaaaatggttcatgtatttcttaatcctggtattttgctctgccaaaatttaatcacttaaaatttcgtccctc 20704640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 54318023 - 54317926
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatcactgc 168  Q
    |||||||| || ||||| |||||||| ||||| ||||||||||  |||||||||||||||||| | ||||||||||| |||  || |||||||||||||    
T  54318023 tcatttaagaaatggtccatgtattcgttaatactgacaattta-cctcccaaaatttaatcatttaaaatttcgtctctctccctaattaatcactgc 54317926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 26479095 - 26479178
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttc 143  Q
    ||||||||| | ||||||||| ||||| ||||| || |||||||||||||| || ||||||||| |||| ||||| ||||||||    
T  26479095 caaataggggtgatttaaaaaatggtccatgtaatcgttaatcctgacaatctgacctcccaaagtttagtcacttaaaatttc 26479178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 26479327 - 26479234
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaacc 154  Q
    |||||||| ||||||||||| |||||  |||| ||||||||| || |||  || ||||||||| |||||||||| ||||||| |||||| ||||    
T  26479327 aaataggggtcatttaaaaaatggtctctgtaatccttaatcgtggcaacctgccctcccaaagtttaatcacttaaaattttgtcccttaacc 26479234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 20704465 - 20704545
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    ||||||||||| ||||   | |||||||||||| ||||| |||| ||| |||||||||||||||| |||||| ||||||||    
T  20704465 tcatttaaaaaatggttcctatattccttaatcttgacattttgccctgccaaaatttaatcacttaaaattccgtccctc 20704545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 30380872 - 30380961
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    |||||||  ||||||||||||||||   ||| || ||||||||||| | |||||| |  ||||||||||||| | |||||||||||||||    
T  30380872 aaataggagtcatttaaaaattggtttttgtttttcttaatcctgatattttgtcatgtcaaaatttaatcatttaaaatttcgtccctc 30380961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 30381146 - 30381075
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatca 132  Q
    |||||||  ||||||||||| ||||| |||||||| ||||| ||| || |||| ||| ||||||||||||||    
T  30381146 aaataggagtcatttaaaaaatggtccatgtattctttaattctggcattttgccctgccaaaatttaatca 30381075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 44654643 - 44654732
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctca 151  Q
    |||||||| ||||||||||| ||||| ||||||| |||||| | | || ||| ||||  ||||||||||||||| |||| || ||||||||    
T  44654643 aaataggggtcatttaaaaaatggtccatgtatttcttaattcaggcattttttcct-gcaaaatttaatcacttaaaaattggtccctca 44654732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 9367832 - 9367888
Alignment:
Q  126 ttaatcactcaaaatttcgtccctcaaccaaattaatcactg-cacatcactaattt 181  Q
    ||||||| | |||||||||||||||| || |||||||||||| ||| ||||||||||    
T  9367832 ttaatcatttaaaatttcgtccctcatcccaattaatcactgccacgtcactaattt 9367888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 35712073 - 35712113
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcct 104  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  35712073 tagggatcatttaaaaattggtccatgtattcgctaatcct 35712113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 15714695 - 15714587
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| |||||||||||||||||  || ||||||||||||||||| |||| ||| |||| ||||||||||| || ||||||| ||||  || | ||    
T  15714695 caaataggggtcatttaaaaattggtctctgcattccttaatcctgacattttgccctgccaagatttaatcacttaacatttcgttcctctccctactt 15714596  T
Q  160 aatcactgc 168  Q
    |||||||||    
T  15714595 aatcactgc 15714587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 20425507 - 20425607
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||||||||||||||||||||  ||||| ||  ||||| || |||  |  |||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  20425507 tagggatcatttaaaaattggttcatgtaatcgataatcttggcaaactaccctctcaaaatttaatcacttaaaatttcgtccctcaaccaagttaatc 20425606  T
Q  164 a 164  Q
    |    
T  20425607 a 20425607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 13311436 - 13311328
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| ||||||||| | ||||  |||||||| |||||| | |||||||| ||| |||||||||||| | | |||||||||||||||  || | ||    
T  13311436 caaataggggtcatttaaacaatggttcatgtattcgttaatcttaacaatttgcccttccaaaatttaataatttaaaatttcgtccctctcccgactt 13311337  T
Q  160 aatcactgc 168  Q
    |||||||||    
T  13311336 aatcactgc 13311328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 21724523 - 21724428
Alignment:
Q  72 atttaaaaattggtcaatgtattcctt---aatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatca 164  Q
    ||||||||| ||||| |||||||| ||   ||||||  ||||||| |||||||||||||||||||| |||| || ||||||||| | |||||||||    
T  21724523 atttaaaaaatggtccatgtattcgttgttaatcctagcaatttgccctcccaaaatttaatcacttaaaaattagtccctcaatccaattaatca 21724428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 23609063 - 23608984
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    ||||||||||||||||||||| |||||  | |||||||||||||||||| ||||   |  ||||||||||||||| ||||    
T  23609063 caaatagggatcatttaaaaaatggtccctatattccttaatcctgacattttgcattgtcaaaatttaatcacttaaaa 23608984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 15714421 - 15714514
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaacc 154  Q
    |||||| || |||||||||||| | ||| ||||||||||||||||| || |||| ||| ||||||||| |||||| |||| || |||| ||||||    
T  15714421 caaatatgggtcatttaaaaatggttca-tgtattccttaatcctggcattttgccctgccaaaatttcatcacttaaaaattggtccttcaacc 15714514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 22539385 - 22539328
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaattt 127  Q
    ||||||||||| |||||||| |||| ||||||||||||||||| ||||  ||||||||    
T  22539385 tcatttaaaaaatggtcaatatatttcttaatcctgacaatttatcctatcaaaattt 22539328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 23608833 - 23608897
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaa 124  Q
    ||||||||| |||||||||||||||||  |||||| |||||||||| || |||| ||| ||||||    
T  23608833 caaataggggtcatttaaaaattggtccctgtatttcttaatcctggcattttgccctgccaaaa 23608897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 3914228 - 3914285
Alignment:
Q  125 tttaatcactcaaaatttcgtccctcaaccaaattaatcactg-cacatcactaattt 181  Q
    |||||||| | |||||||||||||||  |||| |||||||||| ||||||||||||||    
T  3914228 tttaatcatttaaaatttcgtccctcttccaacttaatcactgccacatcactaattt 3914285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 17886889 - 17886849
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcct 104  Q
    |||||||||||||||||||| || |||||||| ||||||||    
T  17886889 tagggatcatttaaaaattgatccatgtattcgttaatcct 17886849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 30127470 - 30127569
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    |||||||| |||||||||| ||| || ||||  ||||||||  ||||||| ||||||||  |||||||||| |||| ||  |||||||||| | ||||||    
T  30127470 tagggatcgtttaaaaatt-gtccatatatttgttaatccttgcaatttgccctcccaaggtttaatcacttaaaaattgatccctcaacccagttaatc 30127568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 13378550 - 13378654
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||||| ||||||||||| |||||  ||||||  ||||||||| ||||||| ||||| |||||||||||||| |||| || ||||||||||| | ||    
T  13378550 caaataggggtcatttaaaaaatggtccttgtatttgttaatcctggcaatttgccctcctaaaatttaatcacttaaaaattggtccctcaacccagtt 13378649  T
Q  160 aatca 164  Q
    |||||    
T  13378650 aatca 13378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 1215269 - 1215180
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccct 149  Q
    ||||||||| ||||||||||| || |  ||||||||||||| |||  || |||| |||  ||||||||||||||| ||||||||||||||    
T  1215269 caaatagggctcatttaaaaaatgattcatgtattccttaagcctaccattttgccctgtcaaaatttaatcacttaaaatttcgtccct 1215180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 26463208 - 26463312
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| || ||||||||||||||  ||||||| ||||||||| ||| ||  |||  |||| |||||||| | |||||||||||||||| || | ||||||    
T  26463208 taggggtcgtttaaaaattggtccctgtattcgttaatcctggcaaattacccttgcaaagtttaatcatttaaaatttcgtccctcatcccagttaatc 26463307  T
Q  164 actgc 168  Q
    |||||    
T  26463308 actgc 26463312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 1215032 - 1215111
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    ||||||||| ||||||||||  |||||  |||||| ||||||||||||| |||| |||  ||||||||||||||| ||||    
T  1215032 caaatagggctcatttaaaacatggtctctgtattgcttaatcctgacattttgccctgtcaaaatttaatcacttaaaa 1215111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 26464598 - 26464481
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||| ||||||  ||||| |||| ||||||||| |||| ||  |||||||||| | ||||||    
T  26464598 taggggtcatttaaaaaatggtccctgtatttgttaatcctggcaattttccctcctaaaaattaatcacttaaaaattgatccctcaacctagttaatc 26464499  T
Q  164 actg-cacatcactaatt 180  Q
    | || |||||| ||||||    
T  26464498 agtgccacatcgctaatt 26464481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 28498424 - 28498320
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| |||||||||||||||||  |||| ||  |||||||| |||  |  ||||||||| |||||||| | ||||||| |||||| | || | ||||||    
T  28498424 tagggctcatttaaaaattggtccttgtaatcgctaatcctggcaaactaccctcccaaagtttaatcatttaaaatttggtccctgagcccagttaatc 28498325  T
Q  164 actgc 168  Q
    |||||    
T  28498324 actgc 28498320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 31308 - 31206
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatta 160  Q
    ||||| || ||||||||||||||||| ||||||||||||||  | | | |||| |||  ||||||||||||||| |||||||||||||||  ||||||||    
T  31308 aaatacgggtcatttaaaaattggtccatgtattccttaattataatattttgccctatcaaaatttaatcacttaaaatttcgtccctctcccaaatta 31209  T
Q  161 atc 163  Q
    |||    
T  31208 atc 31206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 31055 - 31124
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    ||||||||||| ||||  |||||||||||||| ||| |||||||||||  ||||||||||||||| ||||    
T  31055 tcatttaaaaaatggttcatgtattccttaattctggcaatttgtcctgtcaaaatttaatcacttaaaa 31124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 31660 - 31753
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatca 164  Q
    ||||||||| | |||||| ||||||| |||||||| |||||||| |||||||||||||||||||| |||| || ||| ||||||| | |||||||    
T  31660 tcatttaaacaatggtca-tgtattcgttaatccttacaatttgccctcccaaaatttaatcacttaaaaattggtctctcaacccagttaatca 31753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 33161 - 33066
Alignment:
Q  72 atttaaaaattggtcaatgtattcctt---aatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatca 164  Q
    ||||||||| ||||| |||||||| ||   ||||||  ||||||| |||||||||||||||||||| |||| || ||||||||| | |||||||||    
T  33161 atttaaaaaatggtccatgtattcgttgttaatcctagcaatttgccctcccaaaatttaatcacttaaaaattagtccctcaatccaattaatca 33066  T

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Target: scaffold0181 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 9507 - 9398
Alignment:
Q  59 ccaaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaat 158  Q
    ||||| |||||||||||||||| |||||  | |||||||||||||||  | ||||||||  ||||||||||||||| |||| || |||||||| || | |    
T  9507 ccaaacagggatcatttaaaaaatggtccctatattccttaatcctggtattttgtcctgtcaaaatttaatcacttaaaaattggtccctcagcccagt 9408  T
Q  159 taatcactgc 168  Q
    |||| |||||    
T  9407 taattactgc 9398  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 11857917 - 11858038
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaatt 159  Q
    ||||||| | ||||||||||| |||||  ||||||||||||||||| || ||||  || |||||||||||||||| |||| || ||||||||  | | ||    
T  11857917 caaatagaggtcatttaaaaaatggtccctgtattccttaatcctggcattttgctctgccaaaatttaatcacttaaaaattggtccctcattccactt 11858016  T
Q  160 aatcactg-cacatcactaatt 180  Q
    |||||||| ||| |||||||||    
T  11858017 aatcactgtcacgtcactaatt 11858038  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 7280235 - 7280313
Alignment:
Q  61 aaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaa 139  Q
    |||||||| ||||||||||| |||||  ||||||| ||||||||| || |||| |||  ||||||||||||||| ||||    
T  7280235 aaataggggtcatttaaaaaatggtctctgtattctttaatcctgtcattttgccctgtcaaaatttaatcacttaaaa 7280313  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 56014934 - 56014990
Alignment:
Q  198 atccagttaaacagaaaagtaccaaaataccctccatcttcatcttcatcctcctccttt 257  Q
    |||||||||||||| |||| ||||||||||||||   |||||||||||||||| ||||||    
T  56014934 atccagttaaacaggaaaggaccaaaataccctc---cttcatcttcatcctcttccttt 56014990  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 11858193 - 11858102
Alignment:
Q  60 caaatagggatcatttaaaaa-ttggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    ||||||||  ||||||||||| ||||||  ||||||||||||||||| || |||  |||  ||||||||||||||| |||| || |||||||    
T  11858193 caaataggagtcatttaaaaaattggtccctgtattccttaatcctggcattttaccctgtcaaaatttaatcacttaaaaattggtccctc 11858102  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 43155895 - 43155791
Alignment:
Q  64 tagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctcaaccaaattaatc 163  Q
    ||||| || ||||||||||||||  |||| || ||||||||| |||||| |||   ||  ||||||||| | |||||||||||||||  || | ||||||    
T  43155895 taggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttatccctgcattatttaatcatttaaaatttcgtccctctccccacttaatc 43155796  T
Q  164 actgc 168  Q
    |||||    
T  43155795 actgc 43155791  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 6524 - 6595
Alignment:
Q  60 caaatagggatcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatc 131  Q
    ||||||||| ||||||||||| ||||| ||||||| |||||||||| || ||||  |||||||| |||||||    
T  6524 caaataggggtcatttaaaaaatggtccatgtatttcttaatcctggcattttgcgctcccaaattttaatc 6595  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 14162 - 14103
Alignment:
Q  91 tattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaatttcgtccctc 150  Q
    |||||||||||||||| | |||| |||||||||||||||||| | ||||||| |||||||    
T  14162 tattccttaatcctgatattttgccctcccaaaatttaatcatttaaaatttggtccctc 14103  T

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Target: scaffold0220 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 23266 - 23338
Alignment:
Q  70 tcatttaaaaattggtcaatgtattccttaatcctgacaatttgtcctcccaaaatttaatcactcaaaattt 142  Q
    ||||||||||||||||| |||||||  ||||||||| |||| | |||| ||||| |||||||| | |||||||    
T  23266 tcatttaaaaattggtctatgtatttgttaatcctgtcaatctatccttccaaagtttaatcatttaaaattt 23338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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