View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_57 (Length: 263)
Name: NF0599_high_57
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_57 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 8978096 - 8977861
Alignment:
| Q |
29 |
aattttgtatatatttctttctttctatcacatgagcaacacatatgttcaataatgacatttaaagttaaaccatatccatttacaacaacttt-gaaa |
127 |
Q |
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| T |
8978096 |
aattttgtatatatttctttctttctatcacatgagcaacacatatgttcaataatgacatgtaaagttaaaccatatccatttacaacaacttttgaaa |
8977997 |
T |
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| Q |
128 |
ctactttatttttctctattcttattgataaaaactgtccagaaagaaagaaaatgaaagagaatgatcgatatatgagatagttttccacaatttatcc |
227 |
Q |
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||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
8977996 |
ctactttatttttctctattcttatcgataaaaacggtagagaaagaaagaaaatgaaagagaatgatcgatatatgagagagttttccacaatttgtct |
8977897 |
T |
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| Q |
228 |
caaaacagtgatacaaatttgacgactgatcaaata |
263 |
Q |
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| T |
8977896 |
caaaatagtgatataaatttggcgactgatcaaata |
8977861 |
T |
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