View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_high_60 (Length: 258)
Name: NF0599_high_60
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_high_60 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 17125579 - 17125371
Alignment:
| Q |
50 |
aaaacgtttatcaaatatatgaaaaaggatgaatggcttacaataggatcaggagcatcttcttgcttacacataacccatggaacacaagtgtttagtc |
149 |
Q |
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| T |
17125579 |
aaaatgtttctcaaatatatgaaaagggatgaatggcttacaattggatcaggagcatcttcttgcttacacataacccatggaacaccagtgtttagtc |
17125480 |
T |
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| Q |
150 |
ctacagccatttgagaaaaccatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcattctcaatctgtatcaattcaaa |
249 |
Q |
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| T |
17125479 |
ctacagccatttgagaaaaccatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcattctcaatctgtatcaattcaaa |
17125380 |
T |
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| Q |
250 |
tcagtggtt |
258 |
Q |
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| T |
17125379 |
tcagtggtt |
17125371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 5230477 - 5230327
Alignment:
| Q |
86 |
cttacaataggatcaggagcatcttcttgcttacacataacccatggaacacaagtgtttagtcctacagccatttgagaaaaccatttggtgtaagatt |
185 |
Q |
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| T |
5230477 |
cttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaagcct |
5230378 |
T |
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| Q |
186 |
ttccaggtgcaccaatttcccattccactggtccatactcattctcaatct |
236 |
Q |
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| T |
5230377 |
ttccaggagcaccaatttcccattccacaggtccatactcattctcaatct |
5230327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 5451744 - 5451671
Alignment:
| Q |
86 |
cttacaataggatcaggagcatcttcttgcttacacataacccatggaacacaagtgtttagtcctacagccat |
159 |
Q |
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| T |
5451744 |
cttacaacaggatcaggagcatcatcttgtttgcacatgacccatggaaccccagtattaagtcctacagccat |
5451671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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