View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_high_65 (Length: 251)

Name: NF0599_high_65
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_high_65
NF0599_high_65
[»] chr4 (31 HSPs)
chr4 (1-245)||(546876-547120)
chr4 (15-212)||(55908634-55908831)
chr4 (32-223)||(1548349-1548538)
chr4 (43-228)||(3438500-3438684)
chr4 (43-222)||(1524420-1524599)
chr4 (110-228)||(8184031-8184149)
chr4 (32-213)||(1552690-1552871)
chr4 (109-228)||(8187091-8187210)
chr4 (43-229)||(640894-641080)
chr4 (32-213)||(53761695-53761874)
chr4 (15-160)||(1600467-1600612)
chr4 (109-213)||(1513407-1513511)
chr4 (108-228)||(1537766-1537886)
chr4 (111-237)||(7307831-7307957)
chr4 (110-213)||(12121458-12121561)
chr4 (109-237)||(1489361-1489489)
chr4 (110-194)||(1519143-1519227)
chr4 (118-212)||(659707-659799)
chr4 (43-237)||(7225817-7226011)
chr4 (167-216)||(558490-558539)
chr4 (113-213)||(553474-553574)
chr4 (17-81)||(1533898-1533962)
chr4 (143-213)||(1508037-1508107)
chr4 (110-180)||(12116576-12116646)
chr4 (96-222)||(55505095-55505221)
chr4 (17-65)||(1495830-1495878)
chr4 (96-211)||(532186-532301)
chr4 (32-83)||(21834301-21834352)
chr4 (167-213)||(566184-566230)
chr4 (111-151)||(1545830-1545870)
chr4 (17-81)||(8186999-8187063)
[»] scaffold0295 (1 HSPs)
scaffold0295 (15-228)||(530-743)
[»] chr3 (4 HSPs)
chr3 (32-213)||(13470655-13470836)
chr3 (32-225)||(51113704-51113897)
chr3 (37-228)||(51764368-51764559)
chr3 (42-220)||(51120826-51121004)
[»] chr2 (4 HSPs)
chr2 (15-212)||(1037570-1037767)
chr2 (108-213)||(45245084-45245189)
chr2 (110-223)||(32785773-32785886)
chr2 (41-81)||(45245017-45245057)
[»] chr8 (8 HSPs)
chr8 (43-220)||(27922496-27922670)
chr8 (108-228)||(18315272-18315392)
chr8 (108-222)||(32151287-32151401)
chr8 (110-201)||(17636402-17636493)
chr8 (32-213)||(34936086-34936267)
chr8 (113-209)||(17628018-17628114)
chr8 (173-213)||(44736530-44736570)
chr8 (108-159)||(21235607-21235658)
[»] chr5 (7 HSPs)
chr5 (44-220)||(32267463-32267636)
chr5 (43-224)||(41889488-41889669)
chr5 (43-220)||(41901472-41901646)
chr5 (134-213)||(20478107-20478186)
chr5 (115-213)||(38267562-38267660)
chr5 (32-77)||(28525142-28525187)
chr5 (116-213)||(37937882-37937979)
[»] chr6 (24 HSPs)
chr6 (32-210)||(6432159-6432337)
chr6 (32-230)||(6585160-6585358)
chr6 (32-213)||(6402855-6403036)
chr6 (32-213)||(7994105-7994286)
chr6 (15-225)||(7119140-7119347)
chr6 (15-225)||(7131618-7131825)
chr6 (32-213)||(6415961-6416142)
chr6 (32-213)||(6423212-6423393)
chr6 (108-218)||(6394854-6394964)
chr6 (52-194)||(6589266-6589408)
chr6 (108-213)||(6410001-6410106)
chr6 (32-212)||(6594529-6594709)
chr6 (115-213)||(14802331-14802429)
chr6 (32-213)||(14820688-14820869)
chr6 (134-216)||(10579761-10579843)
chr6 (108-225)||(9411338-9411455)
chr6 (52-213)||(19632434-19632595)
chr6 (113-213)||(11936279-11936379)
chr6 (113-213)||(11948259-11948359)
chr6 (108-159)||(12102315-12102366)
chr6 (32-209)||(6596851-6597028)
chr6 (167-216)||(6603260-6603309)
chr6 (143-213)||(491488-491561)
chr6 (107-159)||(9410751-9410803)
[»] chr7 (4 HSPs)
chr7 (32-213)||(10614588-10614769)
chr7 (108-213)||(15092150-15092255)
chr7 (173-213)||(10170145-10170185)
chr7 (173-213)||(10177670-10177710)
[»] chr1 (4 HSPs)
chr1 (34-218)||(19468424-19468608)
chr1 (111-207)||(52082582-52082678)
chr1 (143-234)||(7554462-7554553)
chr1 (136-213)||(9586634-9586711)
[»] scaffold0807 (1 HSPs)
scaffold0807 (33-216)||(1388-1574)
[»] scaffold0041 (1 HSPs)
scaffold0041 (136-213)||(39179-39256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (44-81)||(88943-88980)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 547120 - 546876
Alignment:
Q  1 ttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547120 ttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtga 547021  T
Q  101 acctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  547020 acctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttg 546921  T
Q  201 ttgtgggcttttggaattgttactggaaggatgttttcatctcac 245  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  546920 ttgtgggcttttggaattgttactggaagaatgttttcatgtcac 546876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 55908634 - 55908831
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||||| ||| ||||||||||||||||| | || |||||||| ||| || | |||| |  |||||| ||| || ||||     
T  55908634 taacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaata 55908733  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||  |||  ||||||||||||||||| |||||||||||| |||||||||||||||    
T  55908734 aactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 55908831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 1548349 - 1548538
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaaccta-tttggaatgaactttgaagttccta 130  Q
    |||||||||| ||||||||   |||||||||||| || || ||||||||| |   | |||||  |||||| ||| |||||| ||||||||||| |||| |    
T  1548349 gtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattccca 1548445  T
Q  131 aattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttac 223  Q
    || |||||||| |||||||||||||||||| | |  |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  1548446 aactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttac 1548538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 3438500 - 3438684
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    ||||||||||||||||||||||| || |||||||||||| |   |||||||| ||||||  | | || |||||||||||| ||| | |||||||||||      
T  3438500 gttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtat 3438599  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaa 228  Q
    ||| ||||||||||||||  ||  ||||| ||| |||| |||| ||||||||||||||||||||||||||| || |||||||||||    
T  3438600 tgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 3438684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 1524420 - 1524599
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtt-tagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtg 141  Q
    ||||||||||||||||||||  | ||||||||||||||| |||| |||| ||  |  |||| |  | |||||||||||||||||||| || |||||||||    
T  1524420 gttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcat-ggaatgaactttgaagttcccaatttggaggtg 1524518  T
Q  142 gtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgtta 222  Q
     |||| ||||||| ||||| |||  ||||||||||||||||| |||||||| |||||||| ||||||||||| || |||||    
T  1524519 ttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 8184031 - 8184149
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||||||||||  ||  |||||  | |||||||||  |||||||||||||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  210 tttggaattgttactggaa 228  Q
    ||||||| |||||||||||    
T  8184131 tttggaactgttactggaa 8184149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 1552690 - 1552871
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgttt---agtagtgaacctatttggaatgaactttgaagttcc 128  Q
    |||||||||| ||||||||   |||||||||||| || |||||||||||| || || ||||   || || ||| ||| ||||| ||||||||||| ||||    
T  1552690 gtatttgtgaagttttaag---atgttgtaagattagacatttgaacttagcccatagttttatagaagggaagctacttggactgaactttgaaattcc 1552786  T
Q  129 taaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
     ||| |||| ||| |||| ||||||||||||| | | ||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  1552787 caaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttg 1552871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 8187091 - 8187210
Alignment:
Q  109 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 208  Q
    ||||||||||||||| || | ||| |||||||| ||||||||||||||||||  ||  ||||| ||||||| ||||  || |||||||||||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  209 ttttggaattgttactggaa 228  Q
    ||||| | ||||||||||||    
T  8187191 ttttgcagttgttactggaa 8187210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 641080 - 640894
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||||||| |||||||||  | || |||||||||||| ||  ||||   | ||| |||||| |||||||||| |||||| | || | ||||||||||     
T  641080 gttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattggaggtgt 640981  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaag 229  Q
    ||||||||||| ||||||  ||  |||||||||||||||| |||| |||||||| |||  |||| |||||| |  ||||||||||||    
T  640980 tgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaag 640894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 53761695 - 53761874
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||||||||||||| || ||||||||||||||| || | |||| |  |||||| ||| ||||||||||||||| |||||| ||    
T  53761695 gtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaa 53761794  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      | |||| | |||||||||||  ||| |  || || ||| ||||||||  ||||||||| |||| |||| |||||||||||    
T  53761795 gctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaagaattgtcgtgggcttttg 53761874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 1600612 - 1600467
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||| | ||||||||||||| || ||| || || |||||||||||| || | |||| | || |||| ||    ||||||    
T  1600612 taacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatg 1600513  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaa 160  Q
    ||||||||||||| |||| |||||||| ||||||||||| ||||||    
T  1600512 aactttgaagttcttaaactggaggtgttgaacttgtcatatacaa 1600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 1513407 - 1513511
Alignment:
Q  109 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 208  Q
    |||||||||||||||||||| ||| | || ||| |||||||||||  ||||| |||  |||||||||||||||| || ||||||||| ||||| ||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  209 ttttg 213  Q
    |||||    
T  1513507 ttttg 1513511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 1537766 - 1537886
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    ||||||||||||||||||||| ||| | || ||| ||||||||||| |||||| ||| |||||  ||||||| | ||| ||||||||| ||||| |||||    
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  208 cttttggaattgttactggaa 228  Q
    |||||| || | |||||||||    
T  1537866 cttttgcaacttttactggaa 1537886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 7307957 - 7307831
Alignment:
Q  111 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctt 210  Q
    |||||||||| ||||||| |||||||||||  ||||||||||| |||||   ||  |||||||| ||||   | |||||||||||||||||||| |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  211 ttggaattgttactggaaggatgtttt 237  Q
    ||| |  ||||||||||||| ||||||    
T  7307857 ttgcacctgttactggaaggttgtttt 7307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 12121458 - 12121561
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    ||||||||||||||||||| ||| | || ||| ||||||||||| |||||| |||  |||||||||||||||  || ||||||||| ||||  |||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  210 tttg 213  Q
    ||||    
T  12121558 tttg 12121561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 1489361 - 1489489
Alignment:
Q  109 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 208  Q
    |||||||||||||||||||| ||| | || ||| ||||||||||| |||||| ||| ||  | |||||||| | ||| ||||||| | ||||  ||||||    
T  1489361 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 1489460  T
Q  209 ttttggaattgttactggaaggatgtttt 237  Q
    ||||| || | ||||||||||| ||||||    
T  1489461 ttttgcaactcttactggaagggtgtttt 1489489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaa 194  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||||||||||  ||  ||||  || |||||||||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 659799 - 659707
Alignment:
Q  118 tttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    ||||||||||| ||| | |||||| |||||||||||||||||| ||| ||| ||||||||  |||||||||||||| || ||||| |||| ||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaaca--ctatgtgatctcaaggaattgttttggggtttt 659707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 7225817 - 7226011
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||| |||||||||||||||| || ||||||||||||||| | |||  |  |||||| |||      ||||||||||||||||   ||||||||||      
T  7225817 gttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtct 7225916  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaaggatgtttt 237  Q
    ||||||||||||||||||  ||  ||||  ||  |||   |||||| ||||||||||||||||| |||||| || | ||||||||| | ||||||    
T  7225917 tgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaagttgtttt 7226011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 558539 - 558490
Alignment:
Q  167 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  558539 atgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaa 558490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 553574 - 553474
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||||| ||||||  ||| |||||||| |||||||||||  |||||  ||  |||||||| ||||  ||||||| ||||||||||||| |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  213 g 213  Q
    |    
T  553474 g 553474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 1533898 - 1533962
Alignment:
Q  17 acatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||  ||||| || ||||||||||||||||||||||||| |  ||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaactta 1533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 1508037 - 1508107
Alignment:
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||| | |||  ||||||||||||| | ||| ||||||||| ||||| |||||||||||    
T  1508037 tgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttg 1508107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 12116576 - 12116646
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactc 180  Q
    ||||||||||||| ||||| || || |||||| |||||||||||||||||| |||  |||||||| |||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactc 12116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 55505095 - 55505221
Alignment:
Q  96 agtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaag 195  Q
    |||||||||| ||||||||||||||  ||| ||  || | |||||| ||||||||||| ||||||  ||  | |||| |||||| ||||||| |||||||    
T  55505095 agtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaag 55505194  T
Q  196 agttgttgtgggcttttggaattgtta 222  Q
    | |||| |||| |||||| | ||||||    
T  55505195 aattgtcgtggacttttgcatttgtta 55505221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1495830 - 1495878
Alignment:
Q  17 acatatctgaagacagtatttgtgatgttttaaggagatgttgtaagat 65  Q
    |||||||||||||  ||||| || |||||||||||||||||||||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaagat 1495878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 532301 - 532186
Alignment:
Q  96 agtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaag 195  Q
    |||||| ||| ||||||||||||||||||| || ||  | |||||| ||||||||||| ||||||   |  |||||||||  || ||||||| |||||||    
T  532301 agtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaag 532202  T
Q  196 agttgttgtgggcttt 211  Q
    | |||| ||| |||||    
T  532201 aattgtcgtgagcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 21834301 - 21834352
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatc 83  Q
    ||||||| || |||||||||| |||||||||||| | |||||||||||||||    
T  21834301 gtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatc 21834352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 566230 - 566184
Alignment:
Q  167 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||||||||||||||||   ||| |||||||||||    
T  566230 atgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttg 566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 1545870 - 1545830
Alignment:
Q  111 aatgaactttgaagttcctaaattggaggtggtgaacttgt 151  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgt 1545830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 8186999 - 8187063
Alignment:
Q  17 acatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||  |||||||| | ||||| | |||||||||| |||| ||| |||||||||||    
T  8186999 acatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaactta 8187063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 530 - 743
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||||| ||| |||||||||||||||||   || |||||||| ||| || | |||| |  |||||| ||| || ||||     
T  530 taacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaata 629  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 214  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||| |||| ||||||||||||||||| ||||||| |||| |||||||||||| ||      
T  630 aactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattac 729  T
Q  215 aattgttactggaa 228  Q
    || |||||||||||    
T  730 aactgttactggaa 743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 13470655 - 13470836
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||||||| || |||||  |  |||||| ||| |||||||||||||||  ||||| ||    
T  13470655 gtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaa 13470754  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| ||||||  || |||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  13470755 tctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttg 13470836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 51113704 - 51113897
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||||| |||||||||||| || ||||||||||| ||| |  | |||| |  | |||| ||| |||||||||||||||||| ||| ||    
T  51113704 gtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaa 51113803  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactg 225  Q
    | |||||||| |  |||||||| ||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  51113804 actggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactg 51113897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 51764368 - 51764559
Alignment:
Q  37 tgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattgg 136  Q
    ||||| |||||||||||||||| |||||| |||||||||||| ||||| | |||| |  |||||| ||| ||||||||||||||| |||||| ||  |||    
T  51764368 tgtgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctgg 51764467  T
Q  137 aggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaa 228  Q
    ||||| |  ||||||||  |||||  ||  ||||| |||||||||||| ||||||||||| |||||| ||||||||| || | |||||||||    
T  51764468 aggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaa 51764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 51120826 - 51121004
Alignment:
Q  42 tgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtg 141  Q
    ||||||| ||||||||||||| || || || ||||||||  ||  ||||| |  |||||| ||   ||||||||||||||||||||  ||||||||||||    
T  51120826 tgttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtg 51120925  T
Q  142 gtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
     |||||||||| |||||||  ||  ||||||||| ||| ||||| ||||||||||||||| ||||||||||| ||||||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 51121004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 1037570 - 1037767
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||| | || |||||||| ||| || | | || |  |||||| ||| || ||||     
T  1037570 taacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaata 1037669  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||  |||  ||||||||||||||||| |||||||||||| |||||||||||||||    
T  1037670 aactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 1037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 45245084 - 45245189
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||| |||||||||||||| ||| | |||||| |||| |||||| | ||||| ||  |||||||||||||| |||||||||||||||||||| |||||    
T  45245084 tggaataaactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T
Q  208 cttttg 213  Q
    ||||||    
T  45245184 cttttg 45245189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 32785773 - 32785886
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    ||||||||||| ||| ||| ||| | |||||| ||||||||||||||||||   |  |||||||| |||| |||||||||||||  |||| |  ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 32785872  T
Q  210 tttggaattgttac 223  Q
    |||| || ||||||    
T  32785873 tttgaaactgttac 32785886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 45245017 - 45245057
Alignment:
Q  41 atgttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  45245017 atgttttaaggagatgttgtaacattaggcatttaaactta 45245057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 27922670 - 27922496
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||| ||| ||| ||||| || || ||||||||||||||||| |||| | | ||||| |||   | |||||||||||||||||| ||||||||||||     
T  27922670 gttttagggatatgctgtaacattagacatttgaacttatccaagtgttcaatggtgaaacta---gaaatgaactttgaagttcccaaattggaggtgt 27922574  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
    ||||||||||| |||||| |||  |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  27922573 tgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgt 27922496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 18315272 - 18315392
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||  ||  |||||||| |||||||||||||||||||||||||| || ||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtagg 18315371  T
Q  208 cttttggaattgttactggaa 228  Q
    |||||| || ||||| |||||    
T  18315372 cttttgcaactgttattggaa 18315392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 32151401 - 32151287
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||||| |||||| | ||  |||||||| | |||||||||  |||||   |  ||||||||||||||||||||||||||||||||||| |||||    
T  32151401 tggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T
Q  208 cttttggaattgtta 222  Q
    |||||| || |||||    
T  32151301 cttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 17636402 - 17636493
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgt 201  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| |||   ||  | |||||| || | |||||||||||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 34936086 - 34936267
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||| | |||||||||||||||||||| | || || |||||| ||||  || |||||| |  |||||||||     |||||| |||||| ||||| ||    
T  34936086 gtatttatcatgttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaa 34936185  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    | | |||||| || |||||||| ||||||  ||  ||||| ||||||||||||  ||| ||||||||||| |||||||||||    
T  34936186 actagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttg 34936267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 17628018 - 17628114
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    |||||||| || || |||||||||||||| |||||||||||||||| |  ||  ||||| || |||||  |||||||||||||| ||||| ||||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggct 17628114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 44736570 - 44736530
Alignment:
Q  173 aaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  44736570 aaacactcattgtgatctcaaagagttgttgtgggcttttg 44736530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 21235658 - 21235607
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacataca 159  Q
    |||| |||||||||||||||| ||| |||||||| ||||||||||| |||||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 32267636 - 32267463
Alignment:
Q  44 ttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggt 143  Q
    ||||||||| ||||||||| || || ||||||||||||||| | |||| |  |||||| |||   | |||||||||||||||||| |||||||||||  |    
T  32267636 ttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaacta---gaaatgaactttgaagttcccaaattggaggtatt 32267540  T
Q  144 gaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
    |||||||||||| ||||| ||  |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  32267539 gaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgt 32267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 41889488 - 41889669
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||||||| ||||||||| || ||  ||||||||||||||   |||| | ||||||| ||| ||| |||||||||| ||||||| ||||||||||||     
T  41889488 gttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgt 41889587  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttact 224  Q
    ||||||| ||| ||||||  ||  ||||||||||||| |||  |||||||||||||||||| ||||||| | ||||||||||    
T  41889588 tgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttact 41889669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 41901472 - 41901646
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    ||||||||||  |||||||| || || ||||||||||||||||| ||||   ||||||  |||   | |||  ||||||||||||| ||| ||||||||     
T  41901472 gttttaaggatgtgttgtaacattagacatttgaacttatccaagtgttccatagtgagacta---gaaatagactttgaagttcccaaactggaggtgt 41901568  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
    ||||||||||| ||||||  ||  |||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||    
T  41901569 tgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgt 41901646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 20478107 - 20478186
Alignment:
Q  134 tggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||| ||||||||||| |||||| |||  |||| |||||| | | ||||||||||| || ||||||||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttg 20478186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 38267562 - 38267660
Alignment:
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||| ||  | |||||| || ||||| |||||||||  ||  ||||||| ||||||||||| ||||||||||  ||  |||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 28525187 - 28525142
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaa 77  Q
    |||||||| | ||||||||||||||||||||||| ||| |||||||    
T  28525187 gtatttgtcaagttttaaggagatgttgtaagatgagggatttgaa 28525142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 37937979 - 37937882
Alignment:
Q  116 actttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    ||||||||||||| ||  | |||||| || ||||| |||||||||   |  ||||| ||||||||||||| ||||||||||  ||| |||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttg 37937882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 210
Target Start/End: Complemental strand, 6432337 - 6432159
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||||||||||||||||||  | |  |||||||||||| || ||||| ||  |||||| |||  ||||||||||||||||||||| ||    
T  6432337 gtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaa 6432238  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctt 210  Q
      || ||||| ||||||||||| ||||||  ||  ||||||||||||| |||||||||| ||||| |||||||||||||    
T  6432237 gctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggctt 6432159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 6585160 - 6585358
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| |||||||||||||||||| ||| || ||||||||||||||  |    |||| |  |||||| ||| ||||||| ||||||  |||| |  |    
T  6585160 gtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttaccca 6585259  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagg 230  Q
     ||||||||  ||||||||||| ||||||  ||  |||||||||||||||||||||||||||||||||||| || |||||||||| | |||||| ||||    
T  6585260 gttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaagg 6585358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6403036 - 6402855
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||||||||||||| || ||||||||||||||| |    |||| |  |||||| ||| ||||||| ||||||| ||||||  |    
T  6403036 gtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttcccca 6402937  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    | | || ||| ||||||||||| |||| |  ||  |||||||||||||||||||||||||||||| |||| |||||||||||    
T  6402936 actagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 7994105 - 7994286
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| || || |||||  |  |||||| ||| | ||||||||||||| |||||| ||    
T  7994105 gtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaa 7994204  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      | |||||| ||||| ||||| ||||||  || ||||| |||||||| |||||||||||||||| ||||| ||| ||||||    
T  7994205 gctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttg 7994286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 7119347 - 7119140
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    ||||||||||||||   |||||||| | |||||||||||||||| |||||| |  |||||||||||| || | |||| |  |||||| ||| ||||||||    
T  7119347 taacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatg 7119251  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 214  Q
    |||||||  ||||   |  |||||||| ||||||||||| |||| |  ||  |||||||||||||| |||||||||| |||| |||||| ||||||||||    
T  7119250 aactttgttgttcaccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttgg 7119151  T
Q  215 aattgttactg 225  Q
    || | ||||||    
T  7119150 aactattactg 7119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 7131825 - 7131618
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    ||||||||||||||   |||||||| | |||||||||||||||| |||||| |  |||||||||||| || | |||| |  |||||| ||| ||||||||    
T  7131825 taacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatg 7131729  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 214  Q
    |||||||  ||||   |  |||||||| ||||||||||| |||| |  ||  |||||||||||||| |||||||||| |||| |||||| ||||||||||    
T  7131728 aactttgttgttcgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttgg 7131629  T
Q  215 aattgttactg 225  Q
    || | ||||||    
T  7131628 aactattactg 7131618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6416142 - 6415961
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||||| || ||||||||||||  |||||||||||||| ||  ||||  |  |||||| |||  ||||||| |||||| |||||| ||    
T  6416142 gtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaa 6416043  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| ||||||  || |||||| |||| ||||||||||||||||||| |||| | |||||||||    
T  6416042 cctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttg 6415961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6423393 - 6423212
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| |||||||| ||| |||| || || | |  |||||||||||| || |||||  |  |||||| |||  || |||||||||| ||||||| ||    
T  6423393 gtatttgtcatgttttacggaaatgtcgtgagcttaaacatttgaacttagcctattgtgaacaagtgaagctacgtgcaatgaacttttaagttcccaa 6423294  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| ||||||  || |  ||| |||||||||||| |||||||||||||||||||||| |||||    
T  6423293 gctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttg 6423212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 6394964 - 6394854
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||||||| ||||||  |  |||||||| ||||||||||| ||||||  ||  |||||||||| || | |||||||||||||| ||||||||||    
T  6394964 tggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtggg 6394865  T
Q  208 cttttggaatt 218  Q
    |||||| ||||    
T  6394864 cttttgcaatt 6394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 6589266 - 6589408
Alignment:
Q  52 agatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgt 151  Q
    |||||||||||||| ||||||||||||||| ||   |||     |||||| ||| ||||||||||||||| |||||| |   |||||||| |||||||||    
T  6589266 agatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgt 6589365  T
Q  152 cacatacaattgtcaatgatgaaacactctatgtgatctcaaa 194  Q
    || |||||| ||| |||||| ||||||| ||| ||||||||||    
T  6589366 caaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 6410106 - 6410001
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    ||||||||||||||||||||| ||  || ||||| |||||| |||| ||||||  ||  |||||||||| || |||||||||||||||| ||||||| ||    
T  6410106 tggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcgg 6410007  T
Q  208 cttttg 213  Q
    ||||||    
T  6410006 cttttg 6410001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 6594529 - 6594709
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||||||||| |||||| |  |||||| ||||||||   |||| |  |||||| |||  |||||| ||||||  |||||| ||    
T  6594529 gtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaa 6594628  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    | |||||||| || |||||||| |||||   ||  ||||||| |||||   |||||||||||||| |||||||||||||||    
T  6594629 actggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggctttt 6594709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||| ||  |||| ||| |||| |||||| ||||||  ||  |||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 14820869 - 14820688
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | | |||||||| |||||||||| | |  ||||||||||||     ||||| || |||||| |||  |||||| ||||||| |||||| ||    
T  14820869 gtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgttcaggagtgaaactacatggaattaactttgcagttcccaa 14820770  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
     || |||||| ||||||| ||| ||||||  ||  || |||||||||| ||| ||||||| |||| ||||||||||||||||    
T  14820769 gttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttg 14820688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 10579761 - 10579843
Alignment:
Q  134 tggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
    |||||||| ||||||||||| ||||||  ||  ||||| |||||||||||  ||||||||||| ||||||| |||||||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaa 10579843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 9411455 - 9411338
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||| |||||||||| ||||| ||  |||||||| ||||||||||| |||||  |||    ||||||| |||||||| ||||||||||| |||| ||||     
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgga 9411356  T
Q  208 cttttggaattgttactg 225  Q
    |||||| || ||||||||    
T  9411355 cttttgcaactgttactg 9411338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 19632595 - 19632434
Alignment:
Q  52 agatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgt 151  Q
    |||||||||||||||| ||||||||||||| |    |||| | |||| |||||| ||||||| ||||||  |||||| ||  | |||||| || ||||||    
T  19632595 agatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgt 19632496  T
Q  152 cacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |  ||||||  ||  |||||||   ||| | |||||||||||||| ||||||||||||||||    
T  19632495 cgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttg 19632434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 11936279 - 11936379
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||||||||||||| ||| |||||||| || ||||||||  |||||  ||  | ||| || ||||||||  |||||||||||||||| ||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  213 g 213  Q
    |    
T  11936379 g 11936379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 11948259 - 11948359
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||||||||||||| ||| |||||||| || ||||||||  |||||  ||  | ||| || ||||||||  |||||||||||||||| ||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  213 g 213  Q
    |    
T  11948359 g 11948359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 12102366 - 12102315
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacataca 159  Q
    |||| |||||||||||||||| ||| |||||||| |||||||||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 6596851 - 6597028
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||| |||||||||  |||||| | ||||||||||| | || | |||| |   ||||| | | ||| ||| ||||||||| ||||  |    
T  6596851 gtatttgtcaagttttcaggagatgtgataagattaagcatttgaactgagccgaatgttcaagtgtgaagcgacttgaaataaactttgaaattcccca 6596950  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
      |||||||| |||||||||||  ||||| |||  |||||||||||||||| |  |||||||||| ||||| ||||||    
T  6596951 gctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctgggct 6597028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6603260 - 6603309
Alignment:
Q  167 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
    ||||||||||| |||||| ||||||||||||||||  |||||||||||||    
T  6603260 atgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaa 6603309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 491561 - 491488
Alignment:
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctca---aagagttgttgtgggcttttg 213  Q
    |||||||||||||||||| ||| || |||| |||||||||||||||| ||   |||||||||| ||| ||||||    
T  491561 tgaacttgtcacatacaagtgttaaagatggaacactctatgtgatcacaattaagagttgttctggacttttg 491488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 9410803 - 9410751
Alignment:
Q  107 ttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacataca 159  Q
    ||||| |||||||||||| ||| || ||||||||| |||| ||||||||||||    
T  9410803 ttggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 10614769 - 10614588
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||||||| || |||||  |  |||||| ||| ||||||||||| |||  ||||| ||    
T  10614769 gtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaa 10614670  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| |||| |  || |||||| ||||||||||||||||||| ||||  ||| |||||||||||    
T  10614669 tctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttg 10614588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 15092150 - 15092255
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||||||| ||||||  |  |||||||| |||| |||||| | ||||  || |||||| |||||||||||| ||||||||||| ||||||||||    
T  15092150 tggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtggg 15092249  T
Q  208 cttttg 213  Q
    ||||||    
T  15092250 cttttg 15092255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 10170145 - 10170185
Alignment:
Q  173 aaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  10170145 aaacactctatgtgatctcaaagtattgttgtggacttttg 10170185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 10177670 - 10177710
Alignment:
Q  173 aaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  10177670 aaacactctatgtgatctcaaagtattgttgtggacttttg 10177710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 19468424 - 19468608
Alignment:
Q  34 atttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaat 133  Q
    |||||| | ||||||||||| |||| ||| || |||||||| |||||| || | |||| |  |||||| ||| ||||| ||||||||| |||||| ||      
T  19468424 atttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagc 19468523  T
Q  134 tggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaatt 218  Q
    |||||||| |||| |||||| ||||||  ||  ||||||||||||| ||||||||||||||||  |||||||| |||||||||||    
T  19468524 tggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtggacttttggaatt 19468608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 52082678 - 52082582
Alignment:
Q  111 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||| ||||| | |||||||||||| ||||||||||| | ||||   |  ||||||||||| | |||||||||||||||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 7554553 - 7554462
Alignment:
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaaggatgt 234  Q
    ||||||| ||| |||||| |||  |||||||| |||||||| ||||||||||||||||| |||| |||||  || |||||||| ||||||||    
T  7554553 tgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgt 7554462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 9586711 - 9586634
Alignment:
Q  136 gaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||| ||||||||||| |||||  ||| |||||||||||||| ||||||| ||||| || |||| |||| ||||||    
T  9586711 gaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttg 9586634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 1388 - 1574
Alignment:
Q  33 tatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaa 132  Q
    ||||||| | |||||||||||||||| |||||| || |||||||||||| ||   |||| |   ||| ||||||||| ||||||||||| |||||||||     
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagcctggtgttcatctgtggacctatttgaaatgaactttgtagttcctaag 1487  T
Q  133 ttggaggtggtgaacttgtcacatacaa---ttgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
     | |||||| || |||||||| ||||||   |||   |||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  1488 ctagaggtgttggacttgtcaaatacaaatgttgatgatgatgaaacactctatgtgatctcaaagaattgttcagggattttggaa 1574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 39256 - 39179
Alignment:
Q  136 gaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||| |||||||| ||  |||||  || |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttg 39179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 88980 - 88943
Alignment:
Q  44 ttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||||||||||| || ||||||||||||    
T  88980 ttttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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