View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_1 (Length: 938)
Name: NF0599_low_1
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 79 - 669
Target Start/End: Original strand, 37336849 - 37337441
Alignment:
| Q |
79 |
gagtgagatgaataatgaatcttgttagtttcctctaaaac--aaatgaatcttgttatttaattttcaccccacgagtgaggagatgcacatttatttt |
176 |
Q |
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| T |
37336849 |
gagtgaaatgaataatgaatcttgttagtttcctctaaaaataaaatgaatcttgttatttaattttcaccccacgagtgaggagatgcacatttatttt |
37336948 |
T |
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| Q |
177 |
cttcctccctgctctttccaaattttgagtgttttttacgcaaaccatttactgtctccttcttctctcataccatacatctttttcttcattccctcat |
276 |
Q |
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| T |
37336949 |
cttcctccctgctctttccaaattttgagtgttttttacgcaaaccatttactgtctccttcttctctcataccatacatctttttcttcattccctcat |
37337048 |
T |
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| Q |
277 |
ttggactatcttctttgagtacaaaccaaactcatttaacaaaatttcttgtttggtttttgatacgttcaagaaaataaccgtcaaaaagaactcattt |
376 |
Q |
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| T |
37337049 |
ttggactatcttctttgagtacaaaccaaactcatttaacaaaatttcttgtttggtttttgatacgttcaagaaaataaccgtcaaaaagaactcattt |
37337148 |
T |
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| Q |
377 |
tattggaagnnnnnnnnnnnnnnnnnnngttgatgataatggagaaaagaagtggtagcttccttagcttctttgatcggaatggaaaatctccaaagaa |
476 |
Q |
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| T |
37337149 |
tgttggaagtttttctttttctttctttgttgatgataatggagaaaagaagtggtagcttccttagcttctttgatcggaatggaaaatctccaaagaa |
37337248 |
T |
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| Q |
477 |
actcctttgttacaatcctaacttacctggcaattatttctagtctttaatatatatagtttcattctttctagtgtctgtgaatgtgatgttcctattc |
576 |
Q |
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| T |
37337249 |
actcctttgttacaatcctaacttacctggcaattatttctagtctttaatatatatagtttcattctttctagtgtctgtgaatgtgatgttcctattc |
37337348 |
T |
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| Q |
577 |
tgaatatttttgctcatttttctgtagatgtttcaaaccacgcaaaggaaaacattgaaatcatgccaatgtcacaggtaaacaccagtgtga |
669 |
Q |
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| T |
37337349 |
tgaatatttttgctcatttttctgtagatgtttcaaaccacgcaaaggaaaacattgaaatcatgccaatgtcacaggtaaacaccagtgtga |
37337441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 753 - 909
Target Start/End: Original strand, 37337525 - 37337681
Alignment:
| Q |
753 |
gaaatgttaaacagggccctaatgtcatttgttatgtttaaactagaaattttatcttggaaatgatgggctttgaaactttagaaattgactttttcta |
852 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37337525 |
gaaatgttaaacagggccctaatgacatttgttatgtttaaactagaaattttatcttggaaatgatgggctttgaaactttagaaattgactttttcta |
37337624 |
T |
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| Q |
853 |
cttaaaacttcctttttaagcttcttaacaagtgcccttatagaatttgttagcacg |
909 |
Q |
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| T |
37337625 |
cttaaaacttcctttttaagcttcttaacaagtgcccttacggaatttgttagcacg |
37337681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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