View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_12 (Length: 584)
Name: NF0599_low_12
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 100 - 572
Target Start/End: Original strand, 333219 - 333706
Alignment:
| Q |
100 |
cataatggattaatgcattggctaatgatggagggttttttgtgcatgttggtgttatagtgagtgaaggacattcagattttgtggttttttctgtttc |
199 |
Q |
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| T |
333219 |
cataatggattaatgcattggctaatgatggagggttttttgtgcatgttggtgttatagggagtgaaggacattcagattttgtggttttttctgtttc |
333318 |
T |
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| Q |
200 |
ttgtgatgagatttttgagtcattgttggtgtttgaagttgtggtgagtggttgagtaaatgagaaaatggatgatttgaatagcatgatgaagagaaag |
299 |
Q |
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| T |
333319 |
ttgcgatgagatttttgagtcattgttggtgtttgaagttgtggtgagtggttgagtaaatgagaaaatggatgatttgaatagcatgatgaagagaaag |
333418 |
T |
|
| Q |
300 |
agaaatacaagagagatgatgactagtttgagattggatgagagttgtgttttggatctcatggtttcaatttgattattttgatagaagaagaaaaaat |
399 |
Q |
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| T |
333419 |
agaaatacaagagagatgatgactagtttgagattggatgagagttgtgttttggatctcatggtttcaatttgattattttgatagaagaagaaaaaa- |
333517 |
T |
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| Q |
400 |
tgtatgttttggatctcaacta----------------atgagttttattttgaacatttatgtgagagaggtgtttgttggaaaatgaaaatgtgaatt |
483 |
Q |
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| T |
333518 |
tgtatgttttggatctcaactagtgaggaatagattggatgagttttattttgaaaatttatgtgagagaggtgtttgttggaaaatgaaaatgtgaatt |
333617 |
T |
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| Q |
484 |
tgcttgagagtaaaggtaaaggaaatgtgtaagaatcataagctcatagcaaaagattggtgatattgacttttgaggtgtcatatatt |
572 |
Q |
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| T |
333618 |
tgcttaagagtaaaggtgaagaaaatatgtaagaatcataagctcatagcaaaggattggtgatattgacttttgaggtgtcatatatt |
333706 |
T |
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