View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_13 (Length: 536)
Name: NF0599_low_13
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_13 |
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| [»] scaffold0912 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 57 - 381
Target Start/End: Original strand, 35237652 - 35237975
Alignment:
| Q |
57 |
atatcttcttcatcatccaaaattaacacaaatttaaaccaaaaaattataacactttctcgtcgccatcaaaatctaccggaaatcaagcttcaccaac |
156 |
Q |
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| T |
35237652 |
atatcttcttcgtcatccaaaattaacacaaatttaaatcaaaaaattgtaacaatttctcgtcgccatcaaaatctaccggaaatcaagcttcaccaac |
35237751 |
T |
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| Q |
157 |
aacatcagtaaacaattaagtggtgggaatttgaagtcaatcaaggaaccgtcacccataatcctaataaaagaatcaacactgagaaaatcaaaggtaa |
256 |
Q |
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| T |
35237752 |
aacatcagtaagcaattaagtggtgggaatttgaagtcaatcaaggaaccgtcacccatgatcccaataaaagaatcaacactgagaaaatcaaaggcaa |
35237851 |
T |
|
| Q |
257 |
atgaaattcatcaaaaccacaacaacccaccagcatcattattcnnnnnnnagatttctttctattctctctcacgcacnnnnnnnnnctcaatttggtt |
356 |
Q |
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| T |
35237852 |
accaaattcatcaaaaccacaacaacccaccaacatcattattctttttttagatttctttctattctctctcacgcacaaaaaaaat-tcaatttggtt |
35237950 |
T |
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| Q |
357 |
tttattcttgctcttctcttgttca |
381 |
Q |
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| T |
35237951 |
tttattcttgctcttctcttgttca |
35237975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 1858 - 1896
Alignment:
| Q |
57 |
atatcttcttcatcatccaaaattaacacaaatttaaac |
95 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
1858 |
atattttcttcatcatccaaaattaacacaaatttaaac |
1896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 2274396 - 2274433
Alignment:
| Q |
60 |
tcttcttcatcatccaaaattaacacaaatttaaacca |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
2274396 |
tcttcatcatcatccaaaattaacacaaatttaaacca |
2274433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 18371820 - 18371858
Alignment:
| Q |
66 |
tcatcatccaaaattaacacaaatttaaaccaaaaaatt |
104 |
Q |
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| T |
18371820 |
tcatcatccaacattaacacaaatttaaacccaaaaatt |
18371858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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