View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_14 (Length: 521)
Name: NF0599_low_14
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 334 - 510
Target Start/End: Original strand, 35823047 - 35823218
Alignment:
| Q |
334 |
ttataattataggatcaaatttaggagttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgat |
433 |
Q |
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| T |
35823047 |
ttataattataggatcaaatttagaagttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgat |
35823146 |
T |
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| Q |
434 |
tcaatttcaattttccctttcttattattaagatgtcaggcttagcttagcttgcacaaagtgcttctccagttcat |
510 |
Q |
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| T |
35823147 |
tcaatttcaattttccctttcttattattaagatgtcag-----gcttagcttgcacaaagtgcttctccagttcat |
35823218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 35822720 - 35822859
Alignment:
| Q |
198 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttgatgttctttttg |
297 |
Q |
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| T |
35822720 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttggtgttctttttg |
35822819 |
T |
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| Q |
298 |
tattttccacatgacatcacttcacttcaactttatttat |
337 |
Q |
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| T |
35822820 |
tattttccacatgacatcacttcacttcaactttatttat |
35822859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 35822506 - 35822583
Alignment:
| Q |
60 |
tctagcatacatatgtcttgaagtagtttacatataaaaatttaatttttggatggtacaacactcactacctcataa |
137 |
Q |
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| T |
35822506 |
tctagcatacatatgtcttgaagtagtttacacataaaaatttaatttttggatggtacaacactcactacctcataa |
35822583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 35822667 - 35822695
Alignment:
| Q |
133 |
cataatatatattcaaataagaaatgtct |
161 |
Q |
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| T |
35822667 |
cataatatatattcaaataagaaatgtct |
35822695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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