View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_low_18 (Length: 503)

Name: NF0599_low_18
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_low_18
NF0599_low_18
[»] chr4 (5 HSPs)
chr4 (16-400)||(41989883-41990263)
chr4 (207-255)||(50138429-50138477)
chr4 (207-239)||(6595518-6595550)
chr4 (207-243)||(30010635-30010671)
chr4 (206-242)||(38616046-38616082)
[»] chr1 (7 HSPs)
chr1 (206-256)||(33244704-33244754)
chr1 (206-256)||(33264877-33264927)
chr1 (178-240)||(40683870-40683931)
chr1 (207-241)||(4371551-4371585)
chr1 (178-256)||(7090544-7090622)
chr1 (206-239)||(13054995-13055028)
chr1 (206-255)||(42388600-42388649)
[»] chr5 (4 HSPs)
chr5 (207-242)||(39692438-39692473)
chr5 (207-249)||(41470863-41470905)
chr5 (207-249)||(41493504-41493546)
chr5 (207-239)||(18251238-18251270)
[»] chr8 (6 HSPs)
chr8 (207-249)||(17069881-17069923)
chr8 (207-249)||(17578350-17578392)
chr8 (204-256)||(8214850-8214902)
chr8 (179-255)||(38513424-38513500)
chr8 (179-259)||(43986516-43986596)
chr8 (207-239)||(45145746-45145778)
[»] chr7 (2 HSPs)
chr7 (178-247)||(2223339-2223408)
chr7 (178-229)||(24356556-24356607)
[»] chr6 (4 HSPs)
chr6 (206-239)||(33012452-33012485)
chr6 (207-249)||(4175460-4175502)
chr6 (207-249)||(6418429-6418471)
chr6 (206-239)||(8595739-8595772)
[»] chr3 (3 HSPs)
chr3 (206-255)||(6869586-6869635)
chr3 (178-232)||(2131470-2131524)
chr3 (186-239)||(6873274-6873327)
[»] chr2 (4 HSPs)
chr2 (207-249)||(40544544-40544586)
chr2 (206-239)||(26774883-26774916)
chr2 (206-239)||(44417619-44417652)
chr2 (207-239)||(18294209-18294241)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 41990263 - 41989883
Alignment:
Q  16 atgatgattaaaagaaaactacttattactacttcatctgaaatacaatccttttaatttttcaactgcagtaannnnnnnnnnnnnnnaccaacatatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||| |||||    
T  41990263 atgatgattaaaagaaaactacttattactacttcatctgaaatacaatccttttaatttttcaactgcagtaatttttttttt-----accaagatatc 41990169  T
Q  116 aataattatgttgcacttaacctgtaataaacactatgacggaaacaaaaactaattctagcgtaaacttgtaaaacattatcaatcctcaacaaattta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41990168 aataattatgttgcacttaacctgtaataaacactatgacggaaacaaaaactaattctagcgtaaacttgtaaaacattatcaatcctcaacaaattta 41990069  T
Q  216 atattactaccaactttcttaatttccatgatttagtcaacgagtgtcaagaattaccaactatcaaatcctaacatgattgg-nnnnnnnntaagcacc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  41990068 atattactaccaactttcttaatttccatgatttagtcaacgagtgtcaagaattaccaactatcaaatcctaacatgattggaaaaaaaaataagcacc 41989969  T
Q  315 ttggtggcaaaacaagataatcttgcattaggatcttgaagtccataacattcagaatcagccaaagccatttccacagcattcta 400  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41989968 ttggtggcgaaacaagataatcttgcattaggatcttgaagtccataacattcagaatcagccaaagccatttccacagccttcta 41989883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 50138477 - 50138429
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgatttagtcaa 255  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||    
T  50138477 acaaatttaatattaccaccaactttcttaattcccatgattttgtcaa 50138429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 6595550 - 6595518
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatt 239  Q
    |||||||||||| ||||||||||||||||||||    
T  6595550 acaaatttaataatactaccaactttcttaatt 6595518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 30010671 - 30010635
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttcca 243  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  30010671 acaaatttaatactacaaccaactttcttaatttcca 30010635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 38616046 - 38616082
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatttcc 242  Q
    ||||||||||||||||| || ||||||||||||||||    
T  38616046 aacaaatttaatattacaactaactttcttaatttcc 38616082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 33244754 - 33244704
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatttccatgatttagtcaac 256  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  33244754 aacaaatttaatagtactaccaactttcttaatttctgtgatttagtcaac 33244704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 33264927 - 33264877
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatttccatgatttagtcaac 256  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  33264927 aacaaatttaatagtactaccaactttcttaatttctgtgatttagtcaac 33264877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 40683870 - 40683931
Alignment:
Q  178 gtaaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaactttcttaattt 240  Q
    |||||||||||||| | ||| |||  ||||||||||||||||||||| |||||||||||||||    
T  40683870 gtaaacttgtaaaataatat-aattgtcaacaaatttaatattactatcaactttcttaattt 40683931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 4371585 - 4371551
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttc 241  Q
    |||||||||||||||| ||||||||||||||||||    
T  4371585 acaaatttaatattacaaccaactttcttaatttc 4371551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 7090544 - 7090622
Alignment:
Q  178 gtaaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaactttcttaatttccatgatttagtcaac 256  Q
    |||||||| |||| || |||||||  |||||||||||| ||  ||||  |||||||||||||| | |||||||||||||    
T  7090544 gtaaacttttaaagcaatatcaattatcaacaaatttattaccactaaaaactttcttaattttcgtgatttagtcaac 7090622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 13054995 - 13055028
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatt 239  Q
    ||||||||||||| ||||||||||||||||||||    
T  13054995 aacaaatttaatactactaccaactttcttaatt 13055028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 42388600 - 42388649
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatttccatgatttagtcaa 255  Q
    ||||||||||||||  |||||||||| ||||||| |||||||||| ||||    
T  42388600 aacaaatttaatatacctaccaacttccttaattcccatgatttactcaa 42388649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 39692473 - 39692438
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttcc 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  39692473 acaaatttaatattactaccaactttcttaatttcc 39692438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 41470863 - 41470905
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    |||||||||||||||||| |||||||||||||  |||||||||    
T  41470863 acaaatttaatattactatcaactttcttaatccccatgattt 41470905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 41493504 - 41493546
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||    
T  41493504 acaaatttaatactactaccaacttttttaattttcatgattt 41493546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 18251238 - 18251270
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatt 239  Q
    |||||||||||||||||||||||||| ||||||    
T  18251238 acaaatttaatattactaccaacttttttaatt 18251270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 17069881 - 17069923
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  17069881 acaaatttaatattactaccaactttcttaattcccgtgattt 17069923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 17578392 - 17578350
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  17578392 acaaatttaatattactaccaactttcttaattcccgtgattt 17578350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 8214850 - 8214902
Alignment:
Q  204 tcaacaaatttaatattactaccaactttcttaatttccatgatttagtcaac 256  Q
    ||||||||||||||||||| ||||||||||||||||   |||| |||||||||    
T  8214850 tcaacaaatttaatattaccaccaactttcttaattcttatgaattagtcaac 8214902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 38513500 - 38513424
Alignment:
Q  179 taaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaactttcttaatttccatgatttagtcaa 255  Q
    ||||||||||||||| || ||||  |||||||||||||||  |  | |||||||||||||| || ||||||| ||||    
T  38513500 taaacttgtaaaacaataacaattgtcaacaaatttaataccaaaatcaactttcttaattcccgtgatttactcaa 38513424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 43986596 - 43986516
Alignment:
Q  179 taaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaactttcttaatttccatgatttagtcaacgag 259  Q
    ||||||||||||||| |||||||  |||||||| | |||| ||||| ||| ||||||| ||  | ||||||| ||||||||    
T  43986596 taaacttgtaaaacaatatcaatggtcaacaaactcaatactactatcaattttcttagttctcgtgatttactcaacgag 43986516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 45145746 - 45145778
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatt 239  Q
    ||||||||||||||| |||||||||||||||||    
T  45145746 acaaatttaatattattaccaactttcttaatt 45145778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 2223339 - 2223408
Alignment:
Q  178 gtaaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaactttcttaatttccatgat 247  Q
    |||||||||||||||  ||  |||  |||| ||||||||||||||||||||||||||||| || ||||||    
T  2223339 gtaaacttgtaaaactatacaaattgtcaataaatttaatattactaccaactttcttaaattgcatgat 2223408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 24356556 - 24356607
Alignment:
Q  178 gtaaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaac 229  Q
    |||||||||||||||| || ||||  ||||||||||||||||||| ||||||    
T  24356556 gtaaacttgtaaaacaataccaattatcaacaaatttaatattaccaccaac 24356607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 33012485 - 33012452
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatt 239  Q
    ||||||||||||||||||||||||||||||||||    
T  33012485 aacaaatttaatattactaccaactttcttaatt 33012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 4175460 - 4175502
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||    
T  4175460 acaaatttaatattacaaccaactttcttaatctccgtgattt 4175502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 6418471 - 6418429
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||    
T  6418471 acaaatttaatattacaaccaactttcttaatctccgtgattt 6418429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 8595739 - 8595772
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatt 239  Q
    ||||||||||||||||||| ||||||||||||||    
T  8595739 aacaaatttaatattactaacaactttcttaatt 8595772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 6869586 - 6869635
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatttccatgatttagtcaa 255  Q
    |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  6869586 aacaaatttattactactaccaacttttttaatttccgtgatttagtcaa 6869635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 2131524 - 2131470
Alignment:
Q  178 gtaaacttgtaaaacattatcaatcctcaacaaatttaatattactaccaacttt 232  Q
    ||||| ||||||| || |||||||  ||||||||||||||||||||| |||||||    
T  2131524 gtaaatttgtaaagcaatatcaattgtcaacaaatttaatattactatcaacttt 2131470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 6873274 - 6873327
Alignment:
Q  186 gtaaaacattatcaatcctcaacaaatttaatattactaccaactttcttaatt 239  Q
    |||||||| |||||||  ||||||||||||||| |||||| |||||||| ||||    
T  6873274 gtaaaacaatatcaattgtcaacaaatttaatactactactaactttctaaatt 6873327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 40544544 - 40544586
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatttccatgattt 249  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||    
T  40544544 acaaatttaatattacaaccaactttcttaatctccatcattt 40544586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 26774916 - 26774883
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatt 239  Q
    ||||||||||||||| ||||||||||||||||||    
T  26774916 aacaaatttaatattgctaccaactttcttaatt 26774883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 44417619 - 44417652
Alignment:
Q  206 aacaaatttaatattactaccaactttcttaatt 239  Q
    ||||||||||||||||| ||||||||||||||||    
T  44417619 aacaaatttaatattacaaccaactttcttaatt 44417652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 18294209 - 18294241
Alignment:
Q  207 acaaatttaatattactaccaactttcttaatt 239  Q
    |||||||||||| ||||||||||||||||||||    
T  18294209 acaaatttaataatactaccaactttcttaatt 18294241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 661 times since January 2019
Visitors: 3837