View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_22 (Length: 434)
Name: NF0599_low_22
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 48 - 424
Target Start/End: Original strand, 36791090 - 36791471
Alignment:
| Q |
48 |
cataattacaagcaaaagctctacggatcatataagtcattacattagtagcagctgcaaagttaaagggcatcttcaaacctcaaccatgcaaacagtc |
147 |
Q |
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| T |
36791090 |
cataactacaagcaaaagctctacggatcatataagtcattacattagtagcagctgcaaagttaaagggcatcttcaaacctcaaccatgcaagcagtc |
36791189 |
T |
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| Q |
148 |
atgagtgtgaatctggtggtttttgattcctggattgtatgtaattggtgatccaatacttcagtgatgaggctttcatcccaaaataagtggttttagg |
247 |
Q |
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| T |
36791190 |
atgagtgtgaatctggtggtttttgattcctggattgtatgtaattggtgatccaatacttaagtgatgaggctttcatcccaaaataagtggttttagg |
36791289 |
T |
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| Q |
248 |
tggggatgaggatgagggtggcagggtcattgatgatcttccataatattgagggagcaaaagcattgctgcagtaggtgccattgagaat--------- |
338 |
Q |
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| T |
36791290 |
tgg------ggatgagggtggcagggtcattgatgatcttccataatattgagggagcaaaagcattgctgcagtaggtgccattgagaataagttaaaa |
36791383 |
T |
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| Q |
339 |
--taaaatgggttaatcaaacaacattcacattatatgtagagagagacactagaagtagtggttgggataagcataaatagtctgtg |
424 |
Q |
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| T |
36791384 |
agtaaaatgggttcatcaaacaacattcacattatatgtagagagagacactagaagtagtggttgggataagcataaatagtctgtg |
36791471 |
T |
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