View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0599_low_25 (Length: 410)
Name: NF0599_low_25
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 67 - 399
Target Start/End: Original strand, 3041812 - 3042145
Alignment:
| Q |
67 |
atacaagagtgccacttctatgtttgtaattttttctttgaattctacaattcacaaaatgagacagatataggaattattgagcgtccacaaataagta |
166 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3041812 |
atacaagagtgccacttctatgttcgtaattttttctttgaattctacaattcacaaaatgaaacagatataggaattattgaacgtccacaaataagta |
3041911 |
T |
|
| Q |
167 |
atattattggaccacacaaccatacataaaggataaagataagaagtcatactttcatgaagttaatagtcaaatctggaagtatatggataataaagtc |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3041912 |
atattattcgaccacacaaccatacataaaggataaagataagaagtcatactttcatgaagttaatagtcaaatctggaagtatatggataataaagtc |
3042011 |
T |
|
| Q |
267 |
tactgcagaccccatgcattttgttacttaactctattatctggctggtaaattattggtagttagtaacgttgtcgttcagat-nnnnnnnnctttatg |
365 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3042012 |
tactgtagaccccatgcattttgttacttaactctattatctggctggtaaattaatggtagttagtaacgttgtcgttcagataaaaaaaaactttatg |
3042111 |
T |
|
| Q |
366 |
tatacatcataaattcatagtcatatccagaata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3042112 |
tatacatcataaattcatagtcatatccagaata |
3042145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2517 times since January 2019
Visitors: 3821