View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_29 (Length: 383)
Name: NF0599_low_29
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 8342584 - 8342234
Alignment:
| Q |
11 |
cagagaaatgctaatgtgcacgacataggtgtcatacaaatctcacgaacgactcataaatggaacgtttccaaaaggcctagtttaaccatgttgtctt |
110 |
Q |
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| T |
8342584 |
cagagaaatgctaatgtgcacgacataggtgtcatacaaatctcacgaacgactcataaatggaacgtttccaaatggcctagcttaaccatgttgtctt |
8342485 |
T |
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| Q |
111 |
tttaatagaaacgcagtggatactgttgttgcctccacctccaacggtggtggatgtgccgtctcctgtcgttttggaggca--caactccgaggccaat |
208 |
Q |
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| T |
8342484 |
tttaatagaaacgcagtggatactgttgttgcctccacctccaatggtggtggatgtgccgtctcctgtcgttttggaggcatgccactccgaggccaat |
8342385 |
T |
|
| Q |
209 |
catattagacacaccctctgtcttccggcctcacttttcgatagaattgatacctcgccaattca--ctctataaatcgaagaggttctcaaatgtaact |
306 |
Q |
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| T |
8342384 |
catatcagacacaccctctgtcttccggcctcacttttcgatagaattgatacctcaccaattcactctctataaatcgaagaggttctcaaatgtaact |
8342285 |
T |
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| Q |
307 |
agcagattgctacttatatttcaataataatcaagaggaatttcagttatg |
357 |
Q |
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| T |
8342284 |
agcagattgctacttatatttcaataataatcaagaggaatttcagttatg |
8342234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 155 - 357
Target Start/End: Original strand, 3228110 - 3228315
Alignment:
| Q |
155 |
cggtggtggatgtgccgtctcctgtcgttttggaggca--caactccgaggccaatcatattagacacaccctctgtcttccggcctcacttttcgatag |
252 |
Q |
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| T |
3228110 |
cggtggtggatgtgccgactcctgtcattttggaggcatgccactccgaggccaatcatatcagaaacacc-tctgtcttccgacctcacttttcaatag |
3228208 |
T |
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| Q |
253 |
aattgatacctcgccaattcactct--ataaatcgaagaggttctcaaatgtaactagcagattgctacttatatttcaataataatcaagaggaatttc |
350 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3228209 |
aattgatacctcgccaattcactctctataaatcgaagaggttcccagatgtaactggcagattgctacttatatttcaataataatcaagaggaatttc |
3228308 |
T |
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| Q |
351 |
agttatg |
357 |
Q |
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||||||| |
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| T |
3228309 |
agttatg |
3228315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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