View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_3 (Length: 822)
Name: NF0599_low_3
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 36 - 739
Target Start/End: Complemental strand, 4637166 - 4636467
Alignment:
| Q |
36 |
aaatgacataatgttatttaatgaatctcaatcatcgaaaagttattatcatcaacagctaaagtctctcaatcatcgaaataaaaaactatatcatatc |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4637166 |
aaatgacataatgttatttaatgaatctcaatcatcgaaaagttattatcatcaactgctaaagtctctcaatcatcgaaataaaaaactat--catatc |
4637069 |
T |
|
| Q |
136 |
tacaattatgtaatgtataaacttttctatcatagaaaacaactttcctttttaattatgtaatgtataaacatttttagtaatggagcagatctgcact |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4637068 |
tacaattatgtaatgtataaacttttctatcatagaaaacaattttcctttccaattatgtaatgtataaacatttttagtaatggagcagatctgcact |
4636969 |
T |
|
| Q |
236 |
ctnnnnnnnaaataattgttttagtgcagctttccactctgcttttgtttcgttgacaacaaagctattaaaataagtaaacnnnnnnnntaac------ |
329 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4636968 |
ctgggggg-aaataattgttttagtgcagctttccactctgcttttgtttcgttgacaacaaagctattaaaataagtaaacaaaaaaaaaaaaaaaaaa |
4636870 |
T |
|
| Q |
330 |
cccaccataacttaaaataaggtcatgaattattagcagatact--aataaacatttttccctcttccacactaaacaagaacttcataatatacaattg |
427 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4636869 |
cccaccacaacttaaaataaggtgatgaattattagcagatactgtaataaacatttttccctcttccacactaaacaagaacttcataatatacaattg |
4636770 |
T |
|
| Q |
428 |
tgttaattaattataaattttatgactaagttgccggaccaagtctatgaaaaatagtaaatatttaagtnnnnnnncatgcgttccttttgcaccaaca |
527 |
Q |
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| T |
4636769 |
tgttaat-aattataaatgttatgacaaagttgccggaccaagtctataaaaaatagtaagtaaaaaa--------acatgcgttccttgtgcaccgaca |
4636679 |
T |
|
| Q |
528 |
aacaattcttcaactttttccattccaaaatcaaatcaacaatagaaatgatatcaacttatatggagtattagattagaataaacaaaatttaatttat |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4636678 |
aacaattcttcaactttttccattccaaaatcaaatcaacaatggaaatgatatcaacttatatggagtattagattagaataacaaaaatttaatttat |
4636579 |
T |
|
| Q |
628 |
aaaagctatgaacatagaaggatatggattcaaaatttgttaaaaataccaaattaaattcattgcagcaagaacctatagtcttagttctctttctttg |
727 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4636578 |
aaaagctatgaacatagaaggatatggattcaaaatttgttaaaaataccaaattaaattcattgcagcaagaacctatagtcttagttctctttctttg |
4636479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 528 - 807
Target Start/End: Complemental strand, 4644714 - 4644443
Alignment:
| Q |
528 |
aacaattcttcaactttttccattccaaaatcaaatcaacaatagaaatgatatcaacttatatggagtattagattagaataaacaaaatttaatttat |
627 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||| |||||| |||||||| |
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| T |
4644714 |
aacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatat-----attagattagaataaccaaaatataatttat |
4644620 |
T |
|
| Q |
628 |
aaaagctatgaacatagaaggatatggattcaaaatttgttaaaaataccaaattaaattcattgcagcaagaacctatagtcttagttctctttctttg |
727 |
Q |
| |
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||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4644619 |
aaaagctataaacatagcatgatatggattcaaaatttgttaaaaagaccaaattaaattcattgcagcaagaacctatagtcttagttctctttctttg |
4644520 |
T |
|
| Q |
728 |
tttatataacctgcaaactcgtgagttttaattgaaaagatgtgggatatatctgatcttcatcgtttaactcattgatt |
807 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||||||| |
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| T |
4644519 |
tttacataacctgcaaactcgtgagttttaattgaagagatgtgggatatgtc---tctacatcatttaactcattgatt |
4644443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 373 - 458
Target Start/End: Complemental strand, 4650837 - 4650752
Alignment:
| Q |
373 |
taataaacatttttccctcttccacactaaacaagaacttcataatatacaattgtgttaattaattataaattttatgactaagt |
458 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| | ||| |||||||||||||||||| |||| |
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| T |
4650837 |
taataaacatgtttccctcttccacagaaaacaagaacttcatgatattcaattgtttgaataaattataaattttatgaccaagt |
4650752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 602 - 661
Target Start/End: Complemental strand, 1798151 - 1798092
Alignment:
| Q |
602 |
attagaataaacaaaatttaatttataaaagctatgaacatagaaggatatggattcaaa |
661 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
1798151 |
attagaataaccaaaatttaatttataaaagttatgaacatagcaggatatggattcaaa |
1798092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 12653410 - 12653379
Alignment:
| Q |
30 |
gcaaacaaatgacataatgttatttaatgaat |
61 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
12653410 |
gcaaacaaatgacataatgttatttaatgaat |
12653379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 40740852 - 40740821
Alignment:
| Q |
30 |
gcaaacaaatgacataatgttatttaatgaat |
61 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
40740852 |
gcaaacaaatgacataatgttatttaatgaat |
40740821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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