View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_low_33 (Length: 370)

Name: NF0599_low_33
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_low_33
NF0599_low_33
[»] chr2 (17 HSPs)
chr2 (80-128)||(17976196-17976244)
chr2 (207-245)||(17983900-17983938)
chr2 (32-73)||(13196693-13196734)
chr2 (32-69)||(19189771-19189808)
chr2 (136-172)||(17987251-17987287)
chr2 (32-68)||(33966319-33966355)
chr2 (29-60)||(1901512-1901543)
chr2 (29-72)||(17736787-17736830)
chr2 (29-72)||(29798541-29798584)
chr2 (29-72)||(42475134-42475177)
chr2 (80-114)||(17987213-17987247)
chr2 (35-69)||(32458113-32458147)
chr2 (32-73)||(2256964-2257005)
chr2 (32-72)||(13787557-13787597)
chr2 (32-72)||(14414922-14414962)
chr2 (32-72)||(34977198-34977238)
chr2 (32-72)||(40295485-40295525)
[»] chr4 (17 HSPs)
chr4 (29-72)||(32430147-32430190)
chr4 (32-72)||(15170126-15170166)
chr4 (29-73)||(36059021-36059065)
chr4 (29-72)||(9913893-9913936)
chr4 (29-72)||(35287531-35287574)
chr4 (32-69)||(12917633-12917669)
chr4 (32-69)||(32923257-32923294)
chr4 (32-73)||(40070995-40071036)
chr4 (32-69)||(44572588-44572625)
chr4 (29-73)||(2448142-2448186)
chr4 (32-72)||(4916149-4916189)
chr4 (29-73)||(12588864-12588908)
chr4 (32-72)||(16451203-16451243)
chr4 (32-72)||(23225859-23225899)
chr4 (29-77)||(31604317-31604365)
chr4 (32-72)||(43034369-43034409)
chr4 (32-72)||(51436633-51436673)
[»] chr7 (21 HSPs)
chr7 (29-72)||(27993053-27993096)
chr7 (29-73)||(21993175-21993219)
chr7 (29-72)||(1079716-1079759)
chr7 (29-72)||(23198773-23198816)
chr7 (29-72)||(24226005-24226048)
chr7 (29-72)||(36341089-36341132)
chr7 (29-72)||(46207754-46207797)
chr7 (29-72)||(47342671-47342714)
chr7 (29-72)||(47589577-47589620)
chr7 (30-72)||(4227553-4227595)
chr7 (32-74)||(9522904-9522946)
chr7 (32-73)||(30006119-30006160)
chr7 (29-66)||(44595662-44595699)
chr7 (32-72)||(8883547-8883587)
chr7 (32-72)||(27263335-27263375)
chr7 (32-72)||(27270229-27270269)
chr7 (32-72)||(37516829-37516869)
chr7 (33-69)||(42598935-42598971)
chr7 (29-69)||(44770167-44770207)
chr7 (32-72)||(47943210-47943250)
chr7 (32-72)||(47948640-47948680)
[»] chr3 (14 HSPs)
chr3 (29-72)||(22722396-22722439)
chr3 (29-72)||(28244128-28244171)
chr3 (32-72)||(32303354-32303394)
chr3 (29-69)||(32909325-32909365)
chr3 (29-71)||(3149100-3149142)
chr3 (33-67)||(35355611-35355645)
chr3 (32-73)||(8942010-8942051)
chr3 (32-72)||(1757696-1757736)
chr3 (32-68)||(5941321-5941357)
chr3 (32-72)||(7557561-7557601)
chr3 (32-72)||(23332644-23332684)
chr3 (32-72)||(27432228-27432268)
chr3 (32-72)||(33633345-33633385)
chr3 (32-72)||(49787690-49787730)
[»] chr1 (14 HSPs)
chr1 (29-71)||(47444930-47444972)
chr1 (32-72)||(27853349-27853389)
chr1 (29-72)||(41032925-41032968)
chr1 (34-72)||(6423791-6423829)
chr1 (30-72)||(39452454-39452496)
chr1 (30-72)||(52494050-52494092)
chr1 (32-72)||(1794590-1794630)
chr1 (32-72)||(8266213-8266253)
chr1 (29-73)||(15668491-15668535)
chr1 (32-72)||(26086923-26086963)
chr1 (32-72)||(26803478-26803518)
chr1 (32-72)||(30795695-30795735)
chr1 (32-72)||(48681960-48682000)
chr1 (29-61)||(52262190-52262222)
[»] chr8 (8 HSPs)
chr8 (32-73)||(18148829-18148870)
chr8 (32-73)||(21557426-21557467)
chr8 (32-73)||(8982560-8982601)
chr8 (32-73)||(13357468-13357509)
chr8 (32-73)||(15225798-15225839)
chr8 (32-72)||(10732802-10732842)
chr8 (32-68)||(15188897-15188933)
chr8 (32-76)||(37999447-37999491)
[»] chr5 (17 HSPs)
chr5 (32-73)||(18589894-18589935)
chr5 (32-72)||(18995638-18995678)
chr5 (37-72)||(2322287-2322322)
chr5 (29-72)||(8410469-8410512)
chr5 (29-72)||(10359621-10359664)
chr5 (29-72)||(11637596-11637639)
chr5 (29-72)||(14880406-14880449)
chr5 (32-67)||(16579401-16579436)
chr5 (29-71)||(22619869-22619911)
chr5 (30-72)||(24636673-24636715)
chr5 (32-69)||(26034635-26034672)
chr5 (32-72)||(1512849-1512889)
chr5 (32-72)||(12909193-12909233)
chr5 (32-68)||(15725341-15725377)
chr5 (29-69)||(29178444-29178484)
chr5 (32-72)||(31561371-31561411)
chr5 (32-72)||(33369440-33369480)
[»] chr6 (15 HSPs)
chr6 (29-73)||(5271386-5271430)
chr6 (32-72)||(29335602-29335642)
chr6 (29-72)||(12333592-12333635)
chr6 (32-71)||(28951394-28951433)
chr6 (32-73)||(2726444-2726485)
chr6 (32-73)||(3808145-3808186)
chr6 (29-66)||(9244133-9244170)
chr6 (32-73)||(13496109-13496150)
chr6 (32-73)||(19277567-19277608)
chr6 (32-73)||(20480658-20480699)
chr6 (32-68)||(607426-607462)
chr6 (29-69)||(2108722-2108762)
chr6 (32-72)||(3358385-3358425)
chr6 (29-73)||(16890472-16890516)
chr6 (29-69)||(24269880-24269920)
[»] scaffold0009 (1 HSPs)
scaffold0009 (32-71)||(189618-189657)
[»] scaffold0062 (1 HSPs)
scaffold0062 (29-69)||(7471-7511)


Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 17976196 - 17976244
Alignment:
Q  80 gacatgtttgatcaaacttcatgttaactgttaaaatgaacattattta 128  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  17976196 gacatgtttgatcaaactccatgttaactgttaaaatgaactttattta 17976244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 17983900 - 17983938
Alignment:
Q  207 aaaagagtttatgacatttcttgtaagcttttttcgggc 245  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17983900 aaaagagtttatgacatttcttgtaagcttttttcgggc 17983938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 13196734 - 13196693
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  13196734 ttatgcattgttcataccaactgagttaagttcacgaggact 13196693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 19189771 - 19189808
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgag 69  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19189771 ttatgcattgttcataccaactgagttaagttcacgag 19189808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 17987251 - 17987287
Alignment:
Q  136 ctggtgaataactctctcatgcttgggaaacttatct 172  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17987251 ctggtgaaaaactctctcatgcttgggaaacttatct 17987287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 33966355 - 33966319
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacga 68  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33966355 ttatgcattgttcataccaactgagttaagttcacga 33966319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 1901543 - 1901512
Alignment:
Q  29 attttatgcattgttcatactaactgagttaa 60  Q
    ||||||||||||||||||||||||||||||||    
T  1901543 attttatgcattgttcatactaactgagttaa 1901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 17736830 - 17736787
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  17736830 attttatgcattgttcataccaactgagctaagctcacgaggac 17736787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 29798541 - 29798584
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||    
T  29798541 attttatgcattgtccataccaactgagttaagctcacgaggac 29798584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 42475134 - 42475177
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||    
T  42475134 attttatgcattgtttataccaactgagttaagctcacgaggac 42475177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 17987213 - 17987247
Alignment:
Q  80 gacatgtttgatcaaacttcatgttaactgttaaa 114  Q
    |||||||||||| ||||||||||||||||||||||    
T  17987213 gacatgtttgataaaacttcatgttaactgttaaa 17987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 32458147 - 32458113
Alignment:
Q  35 tgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| ||||||||||||||||||||    
T  32458147 tgcattgttcataccaactgagttaagttcacgag 32458113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 2257005 - 2256964
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||| ||||| |||||||||||| |||||||||||    
T  2257005 ttatgcattgtccataccaactgagttaagctcacgaggact 2256964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 13787557 - 13787597
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| |||||||||||||||| | ||||||||||    
T  13787557 ttatgcattgtccatactaactgagttatgctcacgaggac 13787597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 14414922 - 14414962
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  14414922 ttatgcattgtccataccaactgagttaagctcacgaggac 14414962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 34977238 - 34977198
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  34977238 ttatgcattgtccataccaactgagttaagctcacgaggac 34977198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 40295485 - 40295525
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  40295485 ttatgcattgttcatatcaattgagttaagttcacgaggac 40295525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 32430147 - 32430190
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  32430147 attttatgcattgttcatactaactgagttaagctcacgaggac 32430190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 15170126 - 15170166
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  15170126 ttatgcattgttcataccaactgagttaagttcacgaggac 15170166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 36059065 - 36059021
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    
T  36059065 attttatgcattgttcataccaactgagctaagttcacgaggact 36059021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 9913936 - 9913893
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  9913936 attttatgcattgttcataccaactgagctaagctcacgaggac 9913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 35287531 - 35287574
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  35287531 attttatgcattgttcataccaactgagctaagctcacgaggac 35287574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 12917669 - 12917633
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12917669 ttatgcattgttca-actaactgagttaagttcacgag 12917633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 32923257 - 32923294
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgag 69  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  32923257 ttatgcattgttcataccaactgagttaagctcacgag 32923294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 40070995 - 40071036
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||||||| |||||||||||| |||||| ||||    
T  40070995 ttatgcattgttcataccaactgagttaagctcacgatgact 40071036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 44572625 - 44572588
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgag 69  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  44572625 ttatgcattgtttctactaactgagttaagttcacgag 44572588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 2448186 - 2448142
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||||    
T  2448186 attttatgtattgttcataccaactgaactaagttcacgaggact 2448142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 4916189 - 4916149
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  4916189 ttatgcattgttcaaaccaactgagctaagttcacgaggac 4916149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 12588864 - 12588908
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||| ||||||||||| ||||||||||||  ||||||||||    
T  12588864 attttatgtattgttcataccaactgagttaagaccacgaggact 12588908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 16451243 - 16451203
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||  ||| |||||||||||||||||||||||    
T  16451243 ttatgcattgtttgtaccaactgagttaagttcacgaggac 16451203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 23225899 - 23225859
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  23225899 ttatgaattgttcctaccaactgagttaagttcacgaggac 23225859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 31604317 - 31604365
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggactcatt 77  Q
    |||||||||||||||| ||| |||||||||||| ||||| |||| ||||    
T  31604317 attttatgcattgttcttaccaactgagttaagctcacggggacacatt 31604365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 43034369 - 43034409
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  43034369 ttatgcattgtccataccaactgagttaagctcacgaggac 43034409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 51436633 - 51436673
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
T  51436633 ttatgcattgttcgtatcaactgagttaagttcacgaggac 51436673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 27993053 - 27993096
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  27993053 attttatgcattgttcataccaactgagttaagctcacgaggac 27993096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 21993219 - 21993175
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||    
T  21993219 attttatgcattgtccataccaactgagttaagctcacgaggact 21993175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 1079716 - 1079759
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||    
T  1079716 attttatgcattgttccaactaactgagttaagctcacgaggac 1079759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 23198773 - 23198816
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| |||||||||||  ||||||||||    
T  23198773 attttatgcattgttcataccaactgagttaaactcacgaggac 23198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 24226005 - 24226048
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||    
T  24226005 attttatgcattgtccatacgaactgagctaagttcacgaggac 24226048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 36341089 - 36341132
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||    
T  36341089 attttatgcattgttcataccaactgagttaagctcaagaggac 36341132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 46207797 - 46207754
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  46207797 attttatgcattgttcataccaactgagctaagctcacgaggac 46207754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 47342714 - 47342671
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||    
T  47342714 attttatgcattgtccataccaactgagctaagttcacgaggac 47342671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 47589577 - 47589620
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  47589577 attttatgcattgttcataccaactgagctaagctcacgaggac 47589620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 4227553 - 4227595
Alignment:
Q  30 ttttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||    
T  4227553 ttttatgcattgtccataccaactgagttaagctcacgaggac 4227595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 9522946 - 9522904
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggactc 74  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||    
T  9522946 ttatgcattgttcataccaactgagctaagttcacgcggactc 9522904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 30006119 - 30006160
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||    
T  30006119 ttatgcattattcataccaactgagctaagttcacgaggact 30006160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 44595662 - 44595699
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcac 66  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  44595662 attttatgcattgttcatactaactgagtaaagctcac 44595699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 8883587 - 8883547
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  8883587 ttatgcattgtccataccaactgagttaagctcacgaggac 8883547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 27263375 - 27263335
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  27263375 ttatgcattgtccataccaactgagttaagttcacggggac 27263335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 27270269 - 27270229
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  27270269 ttatgcattgtccataccaactgagttaagttcacggggac 27270229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 37516829 - 37516869
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| |||||||||||||||||| |||| |||||    
T  37516829 ttatgcattgtccatactaactgagttaagctcacaaggac 37516869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 42598971 - 42598935
Alignment:
Q  33 tatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||||  ||||||||||||||||||||    
T  42598971 tatgcattgttcatatcaactgagttaagttcacgag 42598935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44770167 - 44770207
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  44770167 attttatgcattgtccataccaactgagttaagtttacgag 44770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 47943250 - 47943210
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||| | |||||||||||| ||||||||||    
T  47943250 ttatgcattgttcatgcaaactgagttaagctcacgaggac 47943210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 47948680 - 47948640
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||| | |||||||||||| ||||||||||    
T  47948680 ttatgcattgttcatgcaaactgagttaagctcacgaggac 47948640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 22722439 - 22722396
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  22722439 attttatgcattgttcatactaactgagctaagctcacgaggac 22722396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 28244128 - 28244171
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  28244128 attttatgcattgttcataccaactgagttaagctcacgaggac 28244171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 32303394 - 32303354
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  32303394 ttatgcattgttcataccaactgagttacgttcacgaggac 32303354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 32909325 - 32909365
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  32909325 attttatgcattgtccatactaactgagttaagctcacgag 32909365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 3149100 - 3149142
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgagga 71  Q
    |||| ||||||||||||||| |||||||||||| |||||||||    
T  3149100 atttgatgcattgttcatacaaactgagttaagctcacgagga 3149142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 35355645 - 35355611
Alignment:
Q  33 tatgcattgttcatactaactgagttaagttcacg 67  Q
    |||||||||||| ||||||||||||||||||||||    
T  35355645 tatgcattgttcctactaactgagttaagttcacg 35355611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 8942051 - 8942010
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||||||| |||||||||||| |||||| ||||    
T  8942051 ttatgcattgttcataccaactgagttaagctcacgaagact 8942010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 1757696 - 1757736
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||| ||| |||||||||||| ||||||||||    
T  1757696 ttatgcattgttcctaccaactgagttaagctcacgaggac 1757736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 5941321 - 5941357
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacga 68  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  5941321 ttatgcattgttcataccaactgagttaagctcacga 5941357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 7557561 - 7557601
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  7557561 ttatgcattgtccataccaactgagttaagctcacgaggac 7557601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 23332684 - 23332644
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
T  23332684 ttatgcattgttcatatcaactaagttaagttcacgaggac 23332644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 27432268 - 27432228
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  27432268 ttatgcattgtacataccaactaagttaagttcacgaggac 27432228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 33633345 - 33633385
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||  ||||||||||||||||| ||||||||||    
T  33633345 ttatgcattgtctatactaactgagttaagctcacgaggac 33633385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 49787690 - 49787730
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| | |||||||||||||||| ||||||||||    
T  49787690 ttatgcattgtccctactaactgagttaagctcacgaggac 49787730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 47444930 - 47444972
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgagga 71  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  47444930 attttatgcattgttcataccaactaagttaagttcacgagga 47444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 27853389 - 27853349
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  27853389 ttatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 41032968 - 41032925
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  41032968 attttatgcattgttcatatcaactgagttaagctcacgaggac 41032925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 6423791 - 6423829
Alignment:
Q  34 atgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  6423791 atgcattgttcataccaactgagttaagctcacgaggac 6423829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 39452496 - 39452454
Alignment:
Q  30 ttttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||    
T  39452496 ttttatgcattgttcataccaactgagctaagctcacgaggac 39452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 52494092 - 52494050
Alignment:
Q  30 ttttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||    
T  52494092 ttttatgcattgtccatactaactgagctaagtccacgaggac 52494050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 1794630 - 1794590
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  1794630 ttatgcattgtccatactaactgagctaagctcacgaggac 1794590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 8266213 - 8266253
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  8266213 ttatgcattgtccataccaactgagttaagatcacgaggac 8266253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 15668535 - 15668491
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||||||  || |||||||||||| |||||||||||    
T  15668535 attttatgcattgttccaaccaactgagttaagatcacgaggact 15668491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 26086963 - 26086923
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||| |||||| |||||||||||| ||||||||||    
T  26086963 ttatgcattgatcataccaactgagttaagctcacgaggac 26086923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 26803478 - 26803518
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
T  26803478 ttatgcattgtccataccaactgagctaagttcacgaggac 26803518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 30795735 - 30795695
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||| ||| ||||||| |||||||||||||||    
T  30795735 ttatgcattgttcttaccaactgagctaagttcacgaggac 30795695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 48681960 - 48682000
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| ||||||| |||| ||||||||||    
T  48681960 ttatgcattgttcataccaactgagctaagctcacgaggac 48682000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 52262190 - 52262222
Alignment:
Q  29 attttatgcattgttcatactaactgagttaag 61  Q
    |||||||||||||||||||| ||||||||||||    
T  52262190 attttatgcattgttcataccaactgagttaag 52262222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 18148829 - 18148870
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  18148829 ttatgcattgttcatattaactgagttaagctcacgaggact 18148870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 21557467 - 21557426
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  21557467 ttatgcattgtccatactaactgagttaagctcacgaggact 21557426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 8982601 - 8982560
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||||||||||||||||||| ||||  |||||||||||    
T  8982601 ttatgcattgttcatactaactgaattaaactcacgaggact 8982560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 13357468 - 13357509
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||| ||||| |||||||||||| |||||||||||    
T  13357468 ttatgcattgtccataccaactgagttaagctcacgaggact 13357509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 15225839 - 15225798
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||| |||||||||||||||||| |||| ||||||    
T  15225839 ttatgcattgtccatactaactgagttaagctcacaaggact 15225798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 10732802 - 10732842
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  10732802 ttatgcattgttcataccaattgagttaagctcacgaggac 10732842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 15188933 - 15188897
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacga 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  15188933 ttatgcattgtccatactaactgagttaagctcacga 15188897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 37999447 - 37999491
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggactcat 76  Q
    ||||||||| | ||||| |||||||||||| ||||||||||||||    
T  37999447 ttatgcattatccataccaactgagttaagctcacgaggactcat 37999491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 18589894 - 18589935
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  18589894 ttatgcattgttcataccaactgagttaagctcacgaggact 18589935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 18995678 - 18995638
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  18995678 ttatgcattgtccatacaaactgagttaagttcacgaggac 18995638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 2322287 - 2322322
Alignment:
Q  37 cattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||| |||||||||||||||||||||||    
T  2322287 cattgttcataccaactgagttaagttcacgaggac 2322322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 8410469 - 8410512
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||    
T  8410469 attttatgcattgttcacactaactgagctaagctcacgaggac 8410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 10359621 - 10359664
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||    
T  10359621 atttaatgcattgttcataccaactgagctaagttcacgaggac 10359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 11637596 - 11637639
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||    
T  11637596 attttatgcattgtccataccaactgagttaagctcacgaggac 11637639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 14880449 - 14880406
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||    
T  14880449 attttctgcattgttcataccaactgagttaagctcacgaggac 14880406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 16579401 - 16579436
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacg 67  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16579401 ttatgcattgttcataccaactgagttaagttcacg 16579436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 22619911 - 22619869
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgagga 71  Q
    |||||||||||||||||||| ||||||| |||| |||||||||    
T  22619911 attttatgcattgttcataccaactgagctaagctcacgagga 22619869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 24636673 - 24636715
Alignment:
Q  30 ttttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||    
T  24636673 ttttatgcattgtccatactaactgagctaagtccacgaggac 24636715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 26034635 - 26034672
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgag 69  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  26034635 ttatgcattgttcataccaactgagttaagctcacgag 26034672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 1512889 - 1512849
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| | |||||||||||||||| ||||||||||    
T  1512889 ttatgcattgtccctactaactgagttaagctcacgaggac 1512849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 12909193 - 12909233
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||||||||| ||||||| ||| |||||||||||    
T  12909193 ttatgcattgttcataccaactgagctaaattcacgaggac 12909233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 15725341 - 15725377
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacga 68  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  15725341 ttatacattgttcatactaactgagttaagctcacga 15725377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 29178484 - 29178444
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| ||||| |||||||||||| |||||||    
T  29178484 attttatgcattgtccataccaactgagttaagctcacgag 29178444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 31561371 - 31561411
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  31561371 ttatgcattgtccataccaactgagttaagctcacgaggac 31561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 33369440 - 33369480
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  33369440 ttatgtattgttcataccaactgagttaagctcacgaggac 33369480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 5271430 - 5271386
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  5271430 attttatgtattgtccataccaactgagttaagttcacgaggact 5271386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 29335602 - 29335642
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  29335602 ttatgcattgtttatactaactgagttaagctcacgaggac 29335642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 12333592 - 12333635
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||    
T  12333592 attttatgcattgtccatactaactgagctaagctcacgaggac 12333635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 28951433 - 28951394
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgagga 71  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  28951433 ttatgcattgttcataccaactgagttaagctcacgagga 28951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 2726444 - 2726485
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||| ||||| |||||||||||||| |||||||||    
T  2726444 ttatgcattgtccataccaactgagttaagtttacgaggact 2726485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 3808145 - 3808186
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||| | |||||||||||||||||||||| |||||    
T  3808145 ttatgcattgtccttactaactgagttaagttcacggggact 3808186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 9244133 - 9244170
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcac 66  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  9244133 attttattcattgttcataccaactgagttaagttcac 9244170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 13496150 - 13496109
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  13496150 ttatgcattgttcatatcaactgagttaagctcacgaggact 13496109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 19277608 - 19277567
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||| ||  ||||||||||||||||||||||||    
T  19277608 ttatgcattgttcctatcaactgagttaagttcacgaggact 19277567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 20480658 - 20480699
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    ||||||||||||| ||| |||||||||||| |||||||||||    
T  20480658 ttatgcattgttcctaccaactgagttaagctcacgaggact 20480699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 607462 - 607426
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacga 68  Q
    |||||||||||||||||||| |||| |||||||||||    
T  607462 ttatgcattgttcatactaaatgagataagttcacga 607426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 2108762 - 2108722
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| ||||| |||||||||||| |||||||    
T  2108762 attttatgcattgtccataccaactgagttaagctcacgag 2108722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 3358425 - 3358385
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgaggac 72  Q
    ||||||||||| || || |||||||||||||||||||||||    
T  3358425 ttatgcattgtccaaaccaactgagttaagttcacgaggac 3358385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 16890472 - 16890516
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgaggact 73  Q
    |||||||||||||| ||||| |||| ||||||| |||||||||||    
T  16890472 attttatgcattgtccataccaactaagttaagctcacgaggact 16890516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 24269920 - 24269880
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||| ||||||||||||| |||| |||||||    
T  24269920 attttatgcattgtccatactaactgagctaagctcacgag 24269880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 189618 - 189657
Alignment:
Q  32 ttatgcattgttcatactaactgagttaagttcacgagga 71  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  189618 ttatgcattgtccataccaactgagttaagttcacgagga 189657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 7511 - 7471
Alignment:
Q  29 attttatgcattgttcatactaactgagttaagttcacgag 69  Q
    |||||||||||||||||||| || ||||||||| |||||||    
T  7511 attttatgcattgttcataccaattgagttaagctcacgag 7471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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