View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_36 (Length: 354)
Name: NF0599_low_36
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 29 - 348
Target Start/End: Complemental strand, 4172357 - 4172038
Alignment:
| Q |
29 |
actattatctacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataatgtgcagcgtctcatgc |
128 |
Q |
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| T |
4172357 |
actattatctacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgc |
4172258 |
T |
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| Q |
129 |
gtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagagcttcttgt |
228 |
Q |
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| T |
4172257 |
gtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagagcttcttgt |
4172158 |
T |
|
| Q |
229 |
taaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatttgaagaagtggattaatgaggaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
4172157 |
taaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatttcaagaagtggatttatgaggaa |
4172058 |
T |
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| Q |
329 |
gatctcaccccctatgctac |
348 |
Q |
| |
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|||||||||| || |||||| |
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| T |
4172057 |
gatctcaccctctttgctac |
4172038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 31 - 336
Target Start/End: Original strand, 4159647 - 4159952
Alignment:
| Q |
31 |
tattatctacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataatgtgcagcgtctcatgcgt |
130 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4159647 |
tattatccacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgcgt |
4159746 |
T |
|
| Q |
131 |
ctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagagcttcttgtta |
230 |
Q |
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||| |||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
4159747 |
tacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttcttgtta |
4159846 |
T |
|
| Q |
231 |
aagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatttgaagaagtggattaatgaggaaga |
330 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| || ||||| ||| || |||||||||| |
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| T |
4159847 |
aaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcaacttcatttcataacttaaagaaatgggtttatgaggaaga |
4159946 |
T |
|
| Q |
331 |
tctcac |
336 |
Q |
| |
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|||||| |
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| T |
4159947 |
tctcac |
4159952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 279
Target Start/End: Complemental strand, 4177955 - 4177730
Alignment:
| Q |
39 |
acaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataatgtgcagcgtctcatgcgtctccttgc |
138 |
Q |
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|||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||| | ||| | | ||| |||| ||||||||||||| ||| || |
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| T |
4177955 |
acaatcatggcaaaccaatttcactttcaaatttagtttcaattcttcaagttccatcgtcgaaaataggtaacgtgcggcgtctcatgcgttacctcgc |
4177856 |
T |
|
| Q |
139 |
acacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagagcttcttgttaaagggact |
238 |
Q |
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||||| ||||||||||||||| | || ||| |||||||| ||||||||||||| ||| |||||||||||||||||| ||| | | |
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| T |
4177855 |
gcacaacggattctttgagataattac---------------aaaagaagaagagtcttatgctctcactgttgcttcagagcttcttgttagaggtagt |
4177771 |
T |
|
| Q |
239 |
gaactttgtttagctccaatggttgagtgtgttcttgatcc |
279 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||| |
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| T |
4177770 |
gatctttgtttagcaccaatggttgagtgtgttcttgatcc |
4177730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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