View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_38 (Length: 349)
Name: NF0599_low_38
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_38 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 1383230 - 1383575
Alignment:
| Q |
5 |
ggccttattgatcaccccgtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggca |
104 |
Q |
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| T |
1383230 |
ggccttattgatcaccccgtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggca |
1383329 |
T |
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| Q |
105 |
atttcatattggtggctaatgataaggctagcacaaaactttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattat |
204 |
Q |
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| T |
1383330 |
atttcatattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattat |
1383429 |
T |
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| Q |
205 |
gaagcattaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa |
304 |
Q |
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| T |
1383430 |
gaagcattaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctttgcaattcaagcagaa |
1383529 |
T |
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| Q |
305 |
-tatatcttactagtgaacaaagtaggggagaaaaacatggcttcc |
349 |
Q |
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| T |
1383530 |
gtatatcttactagtgaacaaagtaagggagaaaaacatggcttcc |
1383575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 1389335 - 1389680
Alignment:
| Q |
5 |
ggccttattgatcaccccgtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggca |
104 |
Q |
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| T |
1389335 |
ggccttattgatcaccccgtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggca |
1389434 |
T |
|
| Q |
105 |
atttcatattggtggctaatgataaggctagcacaaaactttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattat |
204 |
Q |
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| T |
1389435 |
atttcatattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattat |
1389534 |
T |
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| Q |
205 |
gaagcattaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa |
304 |
Q |
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| T |
1389535 |
gaagcattaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctttgcaattcaagcagaa |
1389634 |
T |
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| Q |
305 |
-tatatcttactagtgaacaaagtaggggagaaaaacatggcttcc |
349 |
Q |
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| T |
1389635 |
gtatatcttactagtgaacaaagtaagggagaaaaacatggcttcc |
1389680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 1372970 - 1373299
Alignment:
| Q |
23 |
gtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggcta |
122 |
Q |
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| T |
1372970 |
gtaaggagccagagcctgaaaaaagtaccatacatgattgatatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggcta |
1373069 |
T |
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| Q |
123 |
atgataaggctagcacaaaactttccattcctgtgtggttgatatggcagcaaagtttatcatattc-------acaaaatggtattatgaagcattacc |
215 |
Q |
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| T |
1373070 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaccaacaaaatggtattatgaagcattacc |
1373169 |
T |
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| Q |
216 |
acaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa-tatatcttac |
314 |
Q |
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| T |
1373170 |
acaatttataagaccataatattggaaatagaaaattaaaaatagtatatata-taagtttgagtataggttttgcaattcaagcagaagtatatcttac |
1373268 |
T |
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| Q |
315 |
tagtgaacaaagtaggggagaaaaacatggcttcc |
349 |
Q |
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| T |
1373269 |
tagtgaac----taagggagaaaaacatggcttcc |
1373299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 63 - 339
Target Start/End: Original strand, 1357650 - 1357945
Alignment:
| Q |
63 |
atatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaactttccattcctgt---gtg |
159 |
Q |
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| T |
1357650 |
atatttatggaagcattaatagtcacacaactacacgtggcaatttcatattggtggctaaagataaggc-accacaaaaatttccaatcttgttgtgtg |
1357748 |
T |
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| Q |
160 |
gttgatatggcagcaaagtttatcatattcacaa--------aatggtattatgaagca-----ttaccacaatttataagaccataatattggaaatag |
246 |
Q |
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| T |
1357749 |
gttaat--ggctgcaatgtttatcattttcacaatcaaacaaaattgtattatgcagcaaccagttaccacaatttttagaaccataatattggaaatac |
1357846 |
T |
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| Q |
247 |
aaaaataaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa-tatatc-----ttactagtgaacaaagtaggggagaaaaa |
339 |
Q |
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| T |
1357847 |
aaaaataaagacattatatatagcaagtttgagtataggctttgaaattcaagcagaagtatatcttacattactagtgaactaagtaagggagaaaaa |
1357945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 1349869 - 1349963
Alignment:
| Q |
210 |
attaccacaatttataagaccataatattggaaatagaaaaataaaaa-cattatataaagcaagtttgagtataggctgtgcaattcaagcagaa |
304 |
Q |
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| T |
1349869 |
attaccacaatat-taagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaa |
1349963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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