View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_40 (Length: 348)
Name: NF0599_low_40
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_40 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 36207128 - 36207467
Alignment:
| Q |
13 |
atactagtacatcaaaataaaacatggacccaacacatgtctatatctatataataacaaccttagcccacataaaatttac----attcccaacttttt |
108 |
Q |
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| T |
36207128 |
atactagtacatcaaaataaaacatggacccaacacatgtctatatctatataataacaaccttagcccacataaaatttacttacattcccaacttttt |
36207227 |
T |
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| Q |
109 |
gtccctttaagcctgtgtggcatatcattgttacataaactatgaaaatgaagcagttccacttgttgcttctcttcactattcttctcttccttacacc |
208 |
Q |
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| T |
36207228 |
gtccctttaagcctgtgtggcatatcattgttacataaactatgaaaatgaagcagttccacctgttccttctcttcactattcttctcttccttacacc |
36207327 |
T |
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| Q |
209 |
tacatcttacaccactaggaccaaattttcaggcccttcaacccaacaacaagcatttcatcgttgggctaattctccaatcagcagcagaggtaaagag |
308 |
Q |
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| T |
36207328 |
tacatcttacaccactaggaccaaattttcaggcccttcaacccaacaacaagcatttcatcgttgggctaattctccaatcagcagcagaggtaaagag |
36207427 |
T |
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| Q |
309 |
tttgagtctcagaaacgaagagtacctacaggagccaacc |
348 |
Q |
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| T |
36207428 |
tttgagtctcagaaacgaagagtacctacaggagccaacc |
36207467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 37177010 - 37176941
Alignment:
| Q |
279 |
aattctccaatcagcagcagaggtaaagagtttgagtctcagaaacgaagagtacctacaggagccaacc |
348 |
Q |
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| T |
37177010 |
aattctccaagcagaagcaaaggtaaagaattcaagtctcagaaacgcaaagtgcctacaggatccaacc |
37176941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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