View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_42 (Length: 346)
Name: NF0599_low_42
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 34420264 - 34420162
Alignment:
| Q |
29 |
aaacttcaactccaagaacatcagcaatcatctcctcagtttcctgaacaacaatttcacaataaatactagaccaacagaagaacaattcttacattta |
128 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34420264 |
aaacttcaactccaagaacatcagcaatcagctcctcagtttcctgaacaacaatttcacaataaatactagaccaacattagaacaattcttacattta |
34420165 |
T |
|
| Q |
129 |
aga |
131 |
Q |
| |
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||| |
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| T |
34420164 |
aga |
34420162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 34424398 - 34424311
Alignment:
| Q |
31 |
acttcaactccaagaacatcagcaatcatctcctcagtttcctgaacaacaatttcacaataaatactagaccaacagaagaacaatt |
118 |
Q |
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||||| |||||||||||||| |||| || |||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||| |
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| T |
34424398 |
acttctactccaagaacatctgcaaccacctcctcagtttcctgaacaacaatttcatagtaaatacttgaccaagagaagaacaatt |
34424311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 24347465 - 24347415
Alignment:
| Q |
29 |
aaacttcaactccaagaacatcagcaatcatctcctcagtttcctgaacaa |
79 |
Q |
| |
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||||||| ||||| |||||||| ||||| |||||||||||||||||||||| |
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|
| T |
24347465 |
aaacttctactccgagaacatctgcaattatctcctcagtttcctgaacaa |
24347415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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