View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_44 (Length: 336)
Name: NF0599_low_44
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 4172065 - 4171744
Alignment:
| Q |
4 |
atgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4172065 |
atgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctat |
4171966 |
T |
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| Q |
104 |
ggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaaca |
203 |
Q |
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| T |
4171965 |
ggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaaca |
4171866 |
T |
|
| Q |
204 |
actggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacat |
303 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4171865 |
actggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacat |
4171766 |
T |
|
| Q |
304 |
atgttggtggggacatgttcat |
325 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
4171765 |
atgtcggtggggacatgttcat |
4171744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 4159937 - 4160258
Alignment:
| Q |
4 |
atgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctat |
103 |
Q |
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|||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| | |
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| T |
4159937 |
atgaggaagatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgcttt |
4160036 |
T |
|
| Q |
104 |
ggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaaca |
203 |
Q |
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| T |
4160037 |
ggctagtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaaca |
4160136 |
T |
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| Q |
204 |
actggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4160137 |
actggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacat |
4160236 |
T |
|
| Q |
304 |
atgttggtggggacatgttcat |
325 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4160237 |
atgttggtggggacatgttcat |
4160258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 4177688 - 4177368
Alignment:
| Q |
4 |
atgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctat |
103 |
Q |
| |
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||||||||||||| || ||||||| | ||||||| | || ||| ||||| |||||| | ||||||||||| |||||||||| || |||||||| || |
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| T |
4177688 |
atgaggaagatcttacactctttggtgttactttagggtctggtttttgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaat |
4177589 |
T |
|
| Q |
104 |
ggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaaca |
203 |
Q |
| |
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|||||||||||| ||| |||| || |||||||||| |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
4177588 |
ggctagtgattctaaattgataaacttggcattgagagattgtgattttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaacc |
4177489 |
T |
|
| Q |
204 |
actggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacat |
303 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||| ||||||||| |||||| | ||| | ||||||||||| |||| ||||| || |||||||| | |
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| T |
4177488 |
actggtaaaattatttgtgagacttttcctaagttgaaatgtattgtgtttgataggccacaagttgtagagaacttatctggaagcaataatttgactt |
4177389 |
T |
|
| Q |
304 |
atgttggtggggacatgttca |
324 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4177388 |
atgttggtggggacatgttca |
4177368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 34343521 - 34343695
Alignment:
| Q |
99 |
gctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatg |
198 |
Q |
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||||||||||||||||| ||||| | |||||||| |||||| |||| | | |||||||| | | | ||||| |||||||||||||||||||||| || |
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| T |
34343521 |
gctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactg |
34343620 |
T |
|
| Q |
199 |
gaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtag |
273 |
Q |
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| T |
34343621 |
gaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 34330989 - 34331071
Alignment:
| Q |
174 |
attgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttga |
256 |
Q |
| |
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||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||||||||| | | |||| |||||||||| |
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| T |
34330989 |
attgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttga |
34331071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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