View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_low_47 (Length: 320)

Name: NF0599_low_47
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_low_47
NF0599_low_47
[»] chr2 (6 HSPs)
chr2 (95-170)||(40453253-40453328)
chr2 (194-296)||(40453122-40453225)
chr2 (237-300)||(19546590-19546652)
chr2 (128-171)||(19546710-19546753)
chr2 (236-298)||(15954366-15954428)
chr2 (252-296)||(32188418-32188462)
[»] chr5 (2 HSPs)
chr5 (236-298)||(30860627-30860689)
chr5 (130-171)||(8759960-8760001)
[»] chr4 (3 HSPs)
chr4 (235-298)||(3516847-3516910)
chr4 (116-171)||(3516974-3517029)
chr4 (130-166)||(11167142-11167178)
[»] chr7 (2 HSPs)
chr7 (240-298)||(5031238-5031296)
chr7 (128-171)||(5031133-5031176)
[»] chr3 (3 HSPs)
chr3 (128-172)||(27087717-27087761)
chr3 (130-171)||(7675911-7675952)
chr3 (244-288)||(26618610-26618654)
[»] chr6 (2 HSPs)
chr6 (194-298)||(6120085-6120189)
chr6 (235-298)||(9860168-9860231)
[»] scaffold0051 (1 HSPs)
scaffold0051 (119-171)||(19922-19974)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 40453328 - 40453253
Alignment:
Q  95 atttgggtcatgcgatccatgcatggccggctatgtgcaagtgcatcaaggcccttggcacagggcctcaaaattt 170  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40453328 atttgggtcatgcgatccatgcatggccgactatgtgcaagtgcatcaaggcccttggcacagggcctcaaaattt 40453253  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 40453225 - 40453122
Alignment:
Q  194 ttgtacctatagacaaaatcagtcactaaatgtannnnnnn-cgtagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggt 292  Q
    ||||||| |||||||||||| |||||||||||||        ||||| ||||| |   ||||||||||||||||||||||||||||| |||||||| |||    
T  40453225 ttgtaccaatagacaaaatctgtcactaaatgtattttttttcgtaggtaaaaattccgaattcaactattttactgtcatttatacattgtccgtaggt 40453126  T
Q  293 aaat 296  Q
    ||||    
T  40453125 aaat 40453122  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 19546652 - 19546590
Alignment:
Q  237 tagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggtaaatgtat 300  Q
    |||||||||||| |||||||||||| |||||||||| |||||| |||||| | |||||||||||    
T  19546652 tagataaaagtccagaattcaacta-tttactgtcaattatacattgtccataggtaaatgtat 19546590  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 19546753 - 19546710
Alignment:
Q  128 tgtgcaagtgcatcaaggcccttggcacagggcctcaaaatttg 171  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  19546753 tgtgcaagtgcattaaggcctttggcacagggcctcaaaatttg 19546710  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 15954366 - 15954428
Alignment:
Q  236 gtagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggtaaatgt 298  Q
    |||| |||||| ||| ||||||||||||||||||||| |||||| |||| | | |||||||||    
T  15954366 gtaggtaaaagcctataattcaactattttactgtcaattatacattgttcataggtaaatgt 15954428  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 32188418 - 32188462
Alignment:
Q  252 aattcaactattttactgtcatttatacgttgtccgtgggtaaat 296  Q
    ||||||||||||||||||||| |||||| |||| ||| |||||||    
T  32188418 aattcaactattttactgtcaattatacattgttcgtaggtaaat 32188462  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 30860627 - 30860689
Alignment:
Q  236 gtagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggtaaatgt 298  Q
    |||||||||||||||||||||||||||||||||  || |||||| |||||||| |||||||||    
T  30860627 gtagataaaagtctagaattcaactattttactaacaattataccttgtccgtaggtaaatgt 30860689  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 8759960 - 8760001
Alignment:
Q  130 tgcaagtgcatcaaggcccttggcacagggcctcaaaatttg 171  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  8759960 tgcaagagcatcaaggcccttggtacagggcctcaaaatttg 8760001  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 3516910 - 3516847
Alignment:
Q  235 cgtagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggtaaatgt 298  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||| || ||||| |||||||||    
T  3516910 cgtaggtaaaagtctagaattcaactattttattgtcaattatacattctccgtaggtaaatgt 3516847  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 3517029 - 3516974
Alignment:
Q  116 catggccggctatgtgcaagtgcatcaaggcccttggcacagggcctcaaaatttg 171  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||||| |||||||||    
T  3517029 catggccagctctgtgcaagtgcatcaaggccctcgacacagggccgcaaaatttg 3516974  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 11167178 - 11167142
Alignment:
Q  130 tgcaagtgcatcaaggcccttggcacagggcctcaaa 166  Q
    |||||||||||| ||||||||||||||||||||||||    
T  11167178 tgcaagtgcatctaggcccttggcacagggcctcaaa 11167142  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 5031238 - 5031296
Alignment:
Q  240 ataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggtaaatgt 298  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||| ||| |||||||||    
T  5031238 ataaaagtccagaattcaactattttactgtcaattatacattgttcgtaggtaaatgt 5031296  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 5031133 - 5031176
Alignment:
Q  128 tgtgcaagtgcatcaaggcccttggcacagggcctcaaaatttg 171  Q
    |||||||||||||||||||||| |||||||||||| || |||||    
T  5031133 tgtgcaagtgcatcaaggccctcggcacagggccttaatatttg 5031176  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 27087761 - 27087717
Alignment:
Q  128 tgtgcaagtgcatcaaggcccttggcacagggcctcaaaatttgg 172  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  27087761 tgtgcaagtgcatcaaggccctaggcacacggcctcaaaatttgg 27087717  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 7675952 - 7675911
Alignment:
Q  130 tgcaagtgcatcaaggcccttggcacagggcctcaaaatttg 171  Q
    |||||||||||||||||| |||||| ||||| ||||||||||    
T  7675952 tgcaagtgcatcaaggcctttggcatagggcttcaaaatttg 7675911  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 26618654 - 26618610
Alignment:
Q  244 aagtctagaattcaactattttactgtcatttatacgttgtccgt 288  Q
    |||| ||||||||||||||||||||||||  ||||| ||||||||    
T  26618654 aagtttagaattcaactattttactgtcaactatacattgtccgt 26618610  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 6120189 - 6120085
Alignment:
Q  194 ttgtacctatagacaaaatcagtcactaaatgtannnnnnncgtagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggta 293  Q
    |||||||||| ||||||||| ||||||||||||        | | | || ||||| ||||||||||||||||||||||| |||||| || ||||| ||||    
T  6120189 ttgtacctatggacaaaatcggtcactaaatgtcatttttccttgggtagaagtccagaattcaactattttactgtcaattatacattatccgtcggta 6120090  T
Q  294 aatgt 298  Q
    |||||    
T  6120089 aatgt 6120085  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 9860168 - 9860231
Alignment:
Q  235 cgtagataaaagtctagaattcaactattttactgtcatttatacgttgtccgtgggtaaatgt 298  Q
    ||||| ||||||| |||||||||||||||||||||||| | || | ||||| || |||||||||    
T  9860168 cgtaggtaaaagtttagaattcaactattttactgtcaatgatgcattgtctgtaggtaaatgt 9860231  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 19974 - 19922
Alignment:
Q  119 ggccggctatgtgcaagtgcatcaaggcccttggcacagggcctcaaaatttg 171  Q
    |||||||  |||||||| ||||||||||| || ||||||||||||||||||||    
T  19974 ggccggccttgtgcaagagcatcaaggccatttgcacagggcctcaaaatttg 19922  T

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