View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_5 (Length: 754)
Name: NF0599_low_5
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 83 - 725
Target Start/End: Original strand, 52383832 - 52384471
Alignment:
| Q |
83 |
cagagattcagtttagcttgttgaactcaattcgatactaacttataatgtatatcatctattttcgacatgaatctcattttgaattctgattcattat |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383832 |
cagagattcagtttagcttgttgaactcaattcgatactaacttataatgtatatc---tattttcgacatgaatctcattttgaattctgattcattat |
52383928 |
T |
|
| Q |
183 |
gatctattctgaccaacaactatctagacttaaagcagtcgatcacnnnnnnnngttcaaatttgtacgacaatataaccaactacttttcttttgtcat |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52383929 |
gatctattctgaccaacaactatctagacttaaagcagtcgatcacttttttttgttcaaatttgtaggacaatataaccaactacttttcttttgtcat |
52384028 |
T |
|
| Q |
283 |
ttgtttatctcagcaacttattggtaatgtatcttacgattcacaatttgaaaaataagtcattcctaatgactaatagaattttgatttgataaccatg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
52384029 |
ttgtttatctcagcaacttattggtaatgtatcttacgattcacaatttgaaaaataagtctttcctgatgactaatagaattttgatttgataaccatg |
52384128 |
T |
|
| Q |
383 |
gtcgtgtccacataataaattctatcttgaaaactagtacacttaattattttaagggacatgcataatttgagatggagaaagtatcgaaggaaccgcc |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52384129 |
gtcgtgtccacataataaattctatcttgaaaactagtacacttaattattttaagggacatgcataatttgagatggagaaagtatcgaaggaaccgcc |
52384228 |
T |
|
| Q |
483 |
tacctctttctgtgacaatgcctgctatttgctggccttctggcttcagtaccaccaatgatccgatatcattttcagccatctaaaacattatatattt |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52384229 |
tacctctttctgtgacaatgcctgctatttgctggccttctggcttcagtaccaccaatgatccgatatcattttcagccatctaaaacattatatattt |
52384328 |
T |
|
| Q |
583 |
gttgagtttgtttagaaacattttctaagttattagtaacagtaaaagctttaaaacaaattgaagagctatcttacattcttcattgcattaaaaacag |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52384329 |
gttgagtttgtttagaaacattttctaagttattagtaacagtaaaagctttaaaacaaattgaagagctatcttacattcttcattgcattaaaaacag |
52384428 |
T |
|
| Q |
683 |
catcatcaactctacaccaaagccaggaacccactctttcttc |
725 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52384429 |
catcatcaactctacaccaaagccaggaacccactttttcttc |
52384471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 35590629 - 35590583
Alignment:
| Q |
139 |
atctattttcgacatgaatctcattttgaattctgattcattatgat |
185 |
Q |
| |
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||||||||| |||| || |||||| |||||||||||||||||||||| |
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|
| T |
35590629 |
atctatttttgacacgattctcatcttgaattctgattcattatgat |
35590583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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