View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_52 (Length: 312)
Name: NF0599_low_52
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 8341842 - 8341680
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8341842 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaatgaaacctcatctggaaatcctcgaaatcctttaaattcaa |
8341743 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaacacttggctgtggagaccatgctaaaattg |
238 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8341742 |
taaagctcaggtgggatacaagacaattaggaatacttggctgtggagaccatgctaaaattg |
8341680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 8382228 - 8382390
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||| || | |||||||| ||| |||||||||||||||||||||| |
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| T |
8382228 |
atatcagcaataatcactgtctttaaaacaagtcctttttgcaaaacatcctcaacaaatgatatctcatctgaaaaacctcgaaatcctttaaattcaa |
8382327 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaacacttggctgtggagaccatgctaaaattg |
238 |
Q |
| |
|
||||| | |||||||||||||||||||||||| || |||||||||||| |||| ||||||||| |
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|
| T |
8382328 |
taaaggtaaggtgggatacgagacaattaggagcagttggctgtggagcccatcctaaaattg |
8382390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 8366227 - 8366389
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||| ||||| ||| | | |||||||| ||||||| ||||| |||||||| || |
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| T |
8366227 |
atatcagcaataatcactgtctttaaaacaagtcctttttgcaaaacatgctcaataaatgttatctcatctgaaaatccttgaaattttttaaattgaa |
8366326 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaacacttggctgtggagaccatgctaaaattg |
238 |
Q |
| |
|
||||| | |||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
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|
| T |
8366327 |
taaaggtaaggtaggatacgagacaattaggagcacttggctgtggagcccatcctaaaattg |
8366389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 46839724 - 46839868
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| |||| |||| ||||| |||||||||||| | | ||||||||||| |||| || ||| |||||| | || |
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|
| T |
46839724 |
atatcatcaataatcattgtcttcaaaacaagtccttttttcaaaatatactcaacaaataatagctcatctggaagtccttgatatcatttaaactgaa |
46839823 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaacacttggctgtg |
220 |
Q |
| |
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|||| ||||||| |||| || |||||||||||||||||| |||| |
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|
| T |
46839824 |
taaaagttaggtgtgatatgatacaattaggaacacttggttgtg |
46839868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 17478816 - 17478658
Alignment:
| Q |
80 |
cagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaataaa |
179 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||| | ||||||||||| |||||| |
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| T |
17478816 |
cagcaataatcattgtttttaaaacaagtccattttgcaaaacatactcgacaaatgacacctcatctggaaatcctcgcagtcctttaaattgaataaa |
17478717 |
T |
|
| Q |
180 |
gcttaggtgggatacgagacaattaggaacacttggctgtggagaccatgctaaaattg |
238 |
Q |
| |
|
| | ||||||||||||||||||| |||||| |||| |||||||| |||| ||||||||| |
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|
| T |
17478716 |
ggtcaggtgggatacgagacaatcaggaacccttgtctgtggagcccatcctaaaattg |
17478658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 4426922 - 4427057
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||| |||||||||||| |||| || |||||||||| |||||| |||||||||||||||| || |
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| T |
4426922 |
atatcagcaataatcaatgtctttaaaacaagtcctttttgtaaaacatactcagcaaatgacacctcatctgaaaatccacgaaatcctttaaattgaa |
4427021 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaacac |
211 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| |
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|
| T |
4427022 |
taaaagttaggtgtgatacgagacaattaggaacac |
4427057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 32848917 - 32849051
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||| | |
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|
| T |
32848917 |
atatcagagataatcaatgtctttaaaacaagtcctttttgcaaaacatgctcaacaaatgaaacctcatccggagatcctctaaatcctttaaattcta |
32849016 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaaca |
210 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||| |
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| T |
32849017 |
taacggttaggtgggatacgagacaatcaggaaca |
32849051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 29585193 - 29585321
Alignment:
| Q |
94 |
gtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaataaagcttaggtgggata |
193 |
Q |
| |
|
|||| |||||| |||| |||||||||||| ||||||||| || |||||||||||||||||| ||||| ||||||||| ||||||| | |||||||||| |
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|
| T |
29585193 |
gtctctaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtaaggtgggata |
29585292 |
T |
|
| Q |
194 |
cgagacaattaggaacacttggctgtgga |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
29585293 |
cgagacaattaggaacacttggcagtgga |
29585321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 4442479 - 4442335
Alignment:
| Q |
94 |
gtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaataaagcttaggtgggata |
193 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||||| || ||||||||||| |||||| |||||||||||||| ||||||| | || ||||||| |
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|
| T |
4442479 |
gtctttaaaaccaatccttcttgcaaaacatgctcaacaaatgacacctcatctggtaatcctaaaaatcctttaaattgaataaaggtcagatgggata |
4442380 |
T |
|
| Q |
194 |
cgagacaattaggaacacttggctgtggagaccatgctaaaattg |
238 |
Q |
| |
|
||||||| |||||| || |||| ||||||| |||| | ||||||| |
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|
| T |
4442379 |
cgagacatttaggagcatttggttgtggagcccatcccaaaattg |
4442335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 4432908 - 4432764
Alignment:
| Q |
76 |
atatcagcaataatcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaaagaaacctcatctggaaatcctcgaaatcctttaaattcaa |
175 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| |||| ||||||| || ||||||| |||| | | ||||||||||| |||| |||||||||||| | || |
|
|
| T |
4432908 |
atatcatcaataatcattgtcttcaaaacaagtcctttttgcagaatatactcagcaaataatagctcatctggaactcctttaaatcctttaaactgaa |
4432809 |
T |
|
| Q |
176 |
taaagcttaggtgggatacgagacaattaggaacacttggctgtg |
220 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
4432808 |
taaaagttaggtgtgatacgatacaattaggaacacttggttgtg |
4432764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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