View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0599_low_54 (Length: 303)
Name: NF0599_low_54
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 25600622 - 25600673
Alignment:
| Q |
33 |
aggtggttgaaaatttccagaaatgtggttttgaaagcatttttaaaagatt |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25600622 |
aggtggttgaaaatttccagaaatgtggttttgaaagcatttttaaaagatt |
25600673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 200773 - 200716
Alignment:
| Q |
200 |
acactaaattgcaaatctaatacaatcacaaatcaaacatattctttaaacaataaat |
257 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
200773 |
acactaaattgcaaatctaattcaatcacaaatcaaagctattctttcaacaataaat |
200716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 18275085 - 18275035
Alignment:
| Q |
206 |
aattgcaaatctaatacaatcacaaatcaaacatattctttaaacaataaat |
257 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
18275085 |
aattgcaaatccaataaaatcacaaatcaaacttattc-ttaaacaataaat |
18275035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 16562527 - 16562580
Alignment:
| Q |
203 |
ctaaattgcaaatctaatacaatcacaaatcaaacatattctttaaacaataaat |
257 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16562527 |
ctaaattgcaaatccaatacaatcattaatcaaacatattc-gtaaacaataaat |
16562580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 238 times since January 2019
Visitors: 3833