View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_low_6 (Length: 713)

Name: NF0599_low_6
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_low_6
NF0599_low_6
[»] chr3 (1 HSPs)
chr3 (1-703)||(32860007-32860707)


Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Complemental strand, 32860707 - 32860007
Alignment:
Q  1 tagaagcacaatgagtgttggtttacataacacagtatagattgtggaaaaataaaattgatatggtgtgttattgtggttcttttgatgatattcagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32860707 tagaagcacaatgagtgttggtttacataacacagtatagattgtggaaaaataaaattgatatggtgtgttattgtggttcttttgatgatattcagaa 32860608  T
Q  101 attggagtggaagttgcatcgtcttgaatgtcaagcactctcaaggctagacagcaacaagagaaaatctgttacaccgtcaatacggttgatgctcaaa 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32860607 atcggagtggaagttgcatcgtcttgaatgtcaagcactctcaaggctagacagcaacaagagaaaatctgttacaccgtcgatacggttgatgctcaaa 32860508  T
Q  201 ctttatcttcgaaggaagctgcaagatgagaaggtaaatgtgaacaaaatttaggtttggttgatgcattggtgctatactgctatttaagttagaactg 300  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| |||||    ||||||||||||||||    
T  32860507 ctttatcttcgaaggaagttgcaagatcagaaggtaaatgtgaacaaagtttagttttggttaatgcattggtgatatac----atttaagttagaactg 32860412  T
Q  301 tatttt--ctctgtaaattttccttcattttctcccagtatgaatatgcttgtaaattaacaaacttcttcaatatttggaagtgcgaaggaattggcag 398  Q
    | ||||  | |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32860411 ttttttgacactgtaaattttccttcattttctcctggtatgaatatgcttgtaaattaacaaacttcttcaatatttggaagtgggaaggaattggcag 32860312  T
Q  399 tgtaaacactgaaaatcaatacttgcattcaatttgagggcctgttatcctt--nnnnnnnnttgtggcttcaaattttttcttctgtgcgtttagaaat 496  Q
    | |||||| |||||||| ||||||||||||||||||||||  | ||||||||          || |||||||| | |||||||  |||| |||||||||     
T  32860311 tataaacattgaaaatccatacttgcattcaatttgagggtttattatccttaaaaaaaaaattatggcttcacaatttttct--tgtgtgtttagaaag 32860214  T
Q  497 cttattacaaccgttgatgattaatatgaacattcaacagtcatgaaagaattttaatattcattttatttccagatcattccaagcactgctatggaca 596  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32860213 cttattacaaccattgatgattaatttgaacattgaacagtcatgaaagaattttaataatcattttatttccagatcattccaagcactgctatggaca 32860114  T
Q  597 attacaagttagtggaggcattagtggctcgtatcctttttattattttagtcttaagctctagggctatgatcgtagatttttctttgtttaccgacat 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||| ||||    
T  32860113 attacaagttagtggaggcattagtggctcgtatcctttttattattgtagtcttaagctctagggctatgatcgtagaattttctctgttaaccaacat 32860014  T
Q  697 gtctgtg 703  Q
    |||||||    
T  32860013 gtctgtg 32860007  T

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