View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_62 (Length: 282)
Name: NF0599_low_62
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 24883130 - 24882857
Alignment:
| Q |
1 |
ccctaaagcaacaaagaaaataagtttatatataaatgcaaaatggctttcaaatgaaatgcatatatatattacccatgaagcaaatgtttttgcatct |
100 |
Q |
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| T |
24883130 |
ccctaaagcaacaaagaaaataagtttatatataaatgcaaaatggctttcaaatgaaatgcatatatatattacccatgaagcaaatgtttttgcatct |
24883031 |
T |
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| Q |
101 |
tgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgttagatagatgtgaaaattgttgatcaatcacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24883030 |
tgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgttacatagatgtgaaaattgttgatcaatcacaaa |
24882931 |
T |
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| Q |
201 |
tattaaaaatcaaagttttagtttaacatgtgataccctgcatcagaatagatccctagctttagacctttgcta |
275 |
Q |
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| T |
24882930 |
tatt-aaaatcaaagttttagtttaacatgtgataccctgcatcagaatagatccctagctttagacctttgcta |
24882857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 32601544 - 32601638
Alignment:
| Q |
72 |
ttacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt |
166 |
Q |
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| T |
32601544 |
ttacccaagaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt |
32601638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 32591076 - 32591169
Alignment:
| Q |
73 |
tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt |
166 |
Q |
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| T |
32591076 |
tacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt |
32591169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 34594626 - 34594696
Alignment:
| Q |
68 |
tatattacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttact |
138 |
Q |
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| T |
34594626 |
tataatacccaagaagcaaatgttttagcatcttgttcttcatgtcccagtgatccaggcatgcgtttact |
34594696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 34578890 - 34578983
Alignment:
| Q |
73 |
tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt |
166 |
Q |
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|||||| |||||||||||||| ||||||||| |||||| || | |||||| ||||| | |||||| || ||| |||||||||| | ||||||| |
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| T |
34578890 |
tacccaagaagcaaatgttttggcatcttgtatttcatgtcccagtgatccaggcatacgtttactacaagttagatttctgcataaaaattgt |
34578983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 35124578 - 35124671
Alignment:
| Q |
73 |
tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt |
166 |
Q |
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|||||| |||||||||||||| ||||||||| |||||| |||| |||||| ||||| | |||||| || ||| ||||||| || | ||||||| |
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| T |
35124578 |
tacccaagaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatgcgtttactacaagttagatttctacataaaaattgt |
35124671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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