View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_67 (Length: 269)
Name: NF0599_low_67
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 33958999 - 33959191
Alignment:
| Q |
31 |
agagacagaagaaagcaatgatttttcctttaaggggtaaacgaaactataaataccaagttttacacatcaaaagtttcaatttcaaaacatcgtacta |
130 |
Q |
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| T |
33958999 |
agagacagaagaaagcaatgatttttcctttaaggggtaaacgaaactataaataccaagttttacacatcaaaagtttcaatttcaaaacatcgtacta |
33959098 |
T |
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| Q |
131 |
caacaacaattgttaaggttcgatatactatactacaaacaacatcgtacttttcatcttctaaacatactcacgcaaccaacattgaatttt |
223 |
Q |
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| T |
33959099 |
caacaacaattgttaaggttcgatatactatactacaaacaacatcgtacttttcatcttctaaacatactcacgcaaccaacattgaatttt |
33959191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 33950462 - 33950502
Alignment:
| Q |
96 |
cacatcaaaagtttcaatttcaaaacatcgtactacaacaa |
136 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| |
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| T |
33950462 |
cacatccaaagtttcaatttcaaaacattctactacaacaa |
33950502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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