View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_low_7 (Length: 693)

Name: NF0599_low_7
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_low_7
NF0599_low_7
[»] chr8 (10 HSPs)
chr8 (239-681)||(5048195-5048654)
chr8 (29-184)||(5047985-5048140)
chr8 (513-613)||(37929107-37929207)
chr8 (513-616)||(8462509-8462612)
chr8 (547-612)||(33191203-33191268)
chr8 (500-642)||(29216926-29217067)
chr8 (572-610)||(41255039-41255077)
chr8 (540-613)||(31686427-31686500)
chr8 (572-616)||(21523919-21523963)
chr8 (572-612)||(38685819-38685859)
[»] chr4 (12 HSPs)
chr4 (292-681)||(20510153-20510561)
chr4 (459-616)||(29969789-29969947)
chr4 (500-642)||(22653274-22653416)
chr4 (515-609)||(25130444-25130538)
chr4 (513-619)||(9831384-9831490)
chr4 (515-612)||(27270006-27270103)
chr4 (516-604)||(21204906-21204994)
chr4 (432-609)||(52577902-52578080)
chr4 (547-612)||(10552672-10552737)
chr4 (513-605)||(30972395-30972487)
chr4 (547-609)||(13137114-13137176)
chr4 (547-612)||(42527342-42527407)
[»] chr5 (8 HSPs)
chr5 (292-681)||(12863418-12863827)
chr5 (292-681)||(12831443-12831852)
chr5 (500-639)||(27482644-27482783)
chr5 (572-632)||(39839963-39840023)
chr5 (513-636)||(19314979-19315102)
chr5 (545-618)||(26778713-26778786)
chr5 (527-612)||(4396672-4396757)
chr5 (572-625)||(32252178-32252231)
[»] chr3 (6 HSPs)
chr3 (383-681)||(33692831-33693130)
chr3 (513-615)||(25845648-25845750)
chr3 (500-625)||(14788854-14788979)
chr3 (540-612)||(36803185-36803257)
chr3 (576-642)||(25408827-25408893)
chr3 (547-613)||(26285216-26285282)
[»] chr7 (9 HSPs)
chr7 (294-681)||(41529148-41529558)
chr7 (499-642)||(17116373-17116516)
chr7 (491-586)||(4997969-4998064)
chr7 (513-642)||(38153905-38154034)
chr7 (513-621)||(34237154-34237262)
chr7 (576-621)||(16560155-16560200)
chr7 (576-621)||(16605462-16605507)
chr7 (547-612)||(40616734-40616799)
chr7 (580-612)||(4997256-4997288)
[»] chr1 (7 HSPs)
chr1 (419-641)||(34703453-34703676)
chr1 (513-640)||(6723683-6723810)
chr1 (513-621)||(36098611-36098719)
chr1 (515-642)||(44675097-44675224)
chr1 (513-609)||(12688178-12688274)
chr1 (572-610)||(52251400-52251438)
chr1 (513-638)||(10686159-10686284)
[»] chr2 (15 HSPs)
chr2 (421-636)||(37738061-37738278)
chr2 (515-642)||(9840768-9840895)
chr2 (500-605)||(44735982-44736087)
chr2 (513-612)||(39117418-39117517)
chr2 (501-642)||(27009186-27009327)
chr2 (420-636)||(27708162-27708379)
chr2 (522-641)||(18766679-18766798)
chr2 (513-642)||(36176612-36176740)
chr2 (515-641)||(30505717-30505843)
chr2 (547-612)||(24739851-24739916)
chr2 (516-615)||(33645833-33645932)
chr2 (547-612)||(841548-841613)
chr2 (572-621)||(45131117-45131166)
chr2 (545-625)||(38409019-38409099)
chr2 (572-612)||(40426926-40426966)
[»] chr6 (9 HSPs)
chr6 (524-642)||(2682773-2682891)
chr6 (516-610)||(12688190-12688284)
chr6 (500-620)||(34714902-34715022)
chr6 (485-611)||(27105243-27105369)
chr6 (485-611)||(27147052-27147178)
chr6 (547-612)||(32533064-32533129)
chr6 (540-609)||(11324494-11324563)
chr6 (572-621)||(17292757-17292806)
chr6 (572-613)||(18672093-18672134)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 239 - 681
Target Start/End: Original strand, 5048195 - 5048654
Alignment:
Q  239 ctagttgtgaaaattattgatggttgttaattaccatttcaattatttcattcatcacttattattacactctagtttctttggttctgtctggcattta 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||    
T  5048195 ctagttgtgaaaattattgatggttgttaattaccatttcaattatttcattcatcacttattattacactgtagtttctttagttgtgtctgacattta 5048294  T
Q  339 atgtatggatggctgggcatatctgcagttgcccctcaaaattta------------------ttcagctactatggtggttcactaagggtccgtcaat 420  Q
    |||||||||||||| ||||||||||||||||||||||||||||||                  |||| | |  ||||||||||| ||||||||||||| |    
T  5048295 atgtatggatggctaggcatatctgcagttgcccctcaaaatttacgggatcattttattcagttcaacgatcatggtggttcagtaagggtccgtca-t 5048393  T
Q  421 caatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaaaattaacatgcaatttacggataaaacttgctcggtattaaaggtggtt 520  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||    
T  5048394 caatttcacaggtcatttggtttgctacagtctgggagatttggaaagaaaaaataacaggcaatttacggataaaacttgctcggtattaaaggtcgtt 5048493  T
Q  521 gataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgctgg 620  Q
    |||||||||||  |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5048494 gataagattaagcccctctcttttatgtggttgaaggtgaaattaaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatactgg 5048593  T
Q  621 gtatatgttaatagttttttctacctattttaattgttgttctatttctattgtaaatatt 681  Q
    | ||| |||||||||||||||| |||||||||||| || |||||||||| |||||||||||    
T  5048594 gcataggttaatagttttttctgcctattttaatttttattctatttctgttgtaaatatt 5048654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 5047985 - 5048140
Alignment:
Q  29 acaaagaaccatcactttcttttactctttctagagcttgtacaattttatcttggaattttttgatctggaccttgctgattgccatagctcgagggtg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5047985 acaaagaaccatcactttcttttactctttctagagcttgtacaattttatcttggaattttttgatctggaccttgctgattgccatagctcgagggtg 5048084  T
Q  129 atatgaagttgacacccacgtgcacatgacaccaggcccacataatcatctatgtc 184  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5048085 atatgaagttgacccccacgtgcacatgacaccaggcccacataatcatctatgtc 5048140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 513 - 613
Target Start/End: Original strand, 37929107 - 37929207
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| |||| |||||| || ||| | |||| ||||||||| |||||||||  ||| |||||||| |||| |||||||||||||||||||||||||||    
T  37929107 aggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 37929206  T
Q  613 c 613  Q
    |    
T  37929207 c 37929207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 616
Target Start/End: Complemental strand, 8462612 - 8462509
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||||||||||||| || ||| | || ||||||||||| | |||||||  | | ||||||||||| | |||||||||||||||||||| ||| ||    
T  8462612 aggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgtttac 8462513  T
Q  613 catg 616  Q
    ||||    
T  8462512 catg 8462509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 33191268 - 33191203
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    |||||||||  |||||||| |||| ||||||||||| | |||||||||||||||||||||||||||    
T  33191268 gtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtccgttcac 33191203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 642
Target Start/End: Original strand, 29216926 - 29217067
Alignment:
Q  500 tgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggc 599  Q
    ||||||||  || ||||||| ||||||||||| |  ||| | |||||||||||||| |||||||||  | | ||||||||| | |   ||||| ||| ||    
T  29216926 tgctcggtgatacaggtggtggataagattaaatatctcgcgtttatgtggttgaaggtgaaatttgcttctcttcccttccattgctatggtaggt-gc 29217024  T
Q  600 ttagtccgttcaccatgctgggtatatgttaatagttttttct 642  Q
    |||||||||| ||||||||||  ||| | |||||||| |||||    
T  29217025 ttagtccgtttaccatgctggacataggctaatagttatttct 29217067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 610
Target Start/End: Complemental strand, 41255077 - 41255039
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttc 610  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  41255077 cttccctttaactatcatggttggtggcttagtccgttc 41255039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 613
Target Start/End: Complemental strand, 31686500 - 31686427
Alignment:
Q  540 cttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcacc 613  Q
    |||||| ||||||||| | |||||||  ||| |||||||| ||||  ||||| ||| |||||||||||||||||    
T  31686500 cttttaggtggttgaaggagaaatttcctactcttccctttaactaccatgggtggcggcttagtccgttcacc 31686427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 616
Target Start/End: Original strand, 21523919 - 21523963
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcaccatg 616  Q
    ||||||||||||| |||||||||||| |||||| | |||||||||    
T  21523919 cttcccttcaactatcatggttggtgacttagttccttcaccatg 21523963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 612
Target Start/End: Original strand, 38685819 - 38685859
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    |||||||| |||| ||||||||||||| |||||||||||||    
T  38685819 cttccctttaactatcatggttggtggattagtccgttcac 38685859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 292 - 681
Target Start/End: Original strand, 20510153 - 20510561
Alignment:
Q  292 atcacttattattacactctagtttctttggttctgtctggcatttaatgtatggatggctgggcatatctgcagttgcccctcaaaattta-------- 383  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||            
T  20510153 atcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctgggcatatctgcagttacccctcaaaatttacgggatca 20510252  T
Q  384 ----------ttcagctactatggtggttcactaagggtccgtcaatcaatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-a 472  Q
              ||||||||| |||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  20510253 ttttattcagttcagctaccatggtggttcaacaagggttcgtcaatcaatttcacaggtcatctggtttgctacagtctaggagatctggaaagaaaga 20510352  T
Q  473 attaacatgcaatttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgc 572  Q
    |  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||    
T  20510353 aacaacatgcaatttacggataaaacttgctcggtattacaggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgc 20510452  T
Q  573 ttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtatatgttaatagttttttctacctattttaattgttgttctatttctatt 672  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||| || ||| ||| ||||||||    
T  20510453 ttcccttcaattttcatggttggtggcttagtccgttcaccatgctgggcataggttaatagttttttctgcttattttagtttttgctctgtttctatt 20510552  T
Q  673 gtaaatatt 681  Q
    |||||||||    
T  20510553 gtaaatatt 20510561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 459 - 616
Target Start/End: Original strand, 29969789 - 29969947
Alignment:
Q  459 atctggaaagaaa-aattaacatgcaatttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatg 557  Q
    ||||||||||||| || ||||| ||  ||||| |||||||| |||||| ||||| ||||||||||||||| ||| ||||   |||||||||||||||| |    
T  29969789 atctggaaagaaagaaataacaggctttttacagataaaacatgctcgatattacaggtggttgataagaataagtcccatacttttatgtggttgaagg 29969888  T
Q  558 tgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatg 616  Q
     |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  29969889 cgaaatttactactcttcccttctacttttatggttggtggcttagtccgttcaccatg 29969947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 642
Target Start/End: Original strand, 22653274 - 22653416
Alignment:
Q  500 tgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggc 599  Q
    ||||||||| || ||||||||||||||||||| || ||| | |||||||||||||| | |||||||  |    || ||||||| | ||||||||||||||    
T  22653274 tgctcggtaatacaggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggc 22653373  T
Q  600 ttagtccgttcaccatgctgggtatatgttaatagttttttct 642  Q
    |||||| ||| ||||||||| ||||| | || ||||| |||||    
T  22653374 ttagtctgtttaccatgctgagtataggctattagttatttct 22653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 609
Target Start/End: Complemental strand, 25130538 - 25130444
Alignment:
Q  515 gtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgtt 609  Q
    ||||| |||||||| || |||||| |||| ||||||||||| | |||||||  ||| ||| || |||||| ||||||||||||||||||||||||    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtt 25130444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 619
Target Start/End: Original strand, 9831384 - 9831490
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| |||||||| || || ||  |||||| ||||||||| | ||||||   ||| ||||||||||| | |||||| ||||||||||||||||||||    
T  9831384 aggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtccgttcac 9831483  T
Q  613 catgctg 619  Q
     ||||||    
T  9831484 tatgctg 9831490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 612
Target Start/End: Complemental strand, 27270103 - 27270006
Alignment:
Q  515 gtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||||| ||||| ||  || |||| ||||||||||| | |||||||  | | ||||||||||| | ||||||||||||||||||||| |||||    
T  27270103 gtggttgataaaattaagtcaatcactttcatgtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccattcac 27270006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 604
Target Start/End: Complemental strand, 21204994 - 21204906
Alignment:
Q  516 tggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagt 604  Q
    |||||||||| ||||| ||  || |||| ||||||||||||| |||||||  | | ||||||||||| | |||||||||||||||||||    
T  21204994 tggttgataaaattaagtcaatcactttcatgtggttgaatgcgaaattttcttcacttcccttcaattatcatggttggtggcttagt 21204906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 609
Target Start/End: Original strand, 52577902 - 52578080
Alignment:
Q  432 gtcatctggtttgctacagtctgggagatctggaaagaaa-aattaacatgcaatttacggataaaacttgctcggtattaaaggtggttgataagatta 530  Q
    ||||| ||||||||||| || ||||| |||||||| |||| || ||||| ||  || |  ||||||  |||||||||  |  ||||| | ||||||||||    
T  52577902 gtcatttggtttgctacggtgtgggaaatctggaaggaaagaaataacaggcttttcaatgataaagtttgctcggttcttcaggtgatagataagatta 52578001  T
Q  531 actccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgtt 609  Q
    | |||||  |||||| ||||||||| ||||| |||    | ||||||||||| | ||||||||||||||||||| ||||    
T  52578002 agtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgtt 52578080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 612
Target Start/End: Original strand, 10552672 - 10552737
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||| ||||| | |  ||| |||||||| |||| |||||||||||||||||||||||||||    
T  10552672 gtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtccgttcac 10552737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 605
Target Start/End: Complemental strand, 30972487 - 30972395
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtc 605  Q
    ||||||||||||| ||||| || ||  |||| |||||| |||| | |||||||  | | ||||||||||||| |||||| |||||||||||||    
T  30972487 aggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtc 30972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 609
Target Start/End: Original strand, 13137114 - 13137176
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgtt 609  Q
    ||||||||| |||||||||  ||| |||  |||||| | ||||||||||||||||||||||||    
T  13137114 gtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtt 13137176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 42527407 - 42527342
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||| |||||||||  ||| ||||| | ||| | ||||||||||||||||| |||||||||    
T  42527407 gtggttgaaggtgaaattttctactcttccttccaattatcatggttggtggcttaatccgttcac 42527342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 292 - 681
Target Start/End: Complemental strand, 12863827 - 12863418
Alignment:
Q  292 atcacttattattacactctagtttctttggttctgtctggcatttaatgtatggatggctgggcatatctgcagttgcccctcaaaattta-------- 383  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||            
T  12863827 atcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctgggcatatctgcagttacccctcaaaatttacgggatca 12863728  T
Q  384 ----------ttcagctactatggtggttcactaagggtccgtcaatcaatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-a 472  Q
              ||||||||| |||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  12863727 ttttattcagttcagctaccatggtggttcaacaagggttcgtcaatcaatttcacaggtcatctggtttgctacagtctaggagatctggaaagaaaga 12863628  T
Q  473 attaacatgcaatttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgc 572  Q
    |  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||    
T  12863627 aacaacatgcaatttacggataaaacttgctcggtattacaggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgc 12863528  T
Q  573 ttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtatatgttaatagtt-ttttctacctattttaattgttgttctatttctat 671  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||| | | ||||||| || ||| ||| ||| |||    
T  12863527 ttcccttcaattttcatggttggtggcttagtccgttcactatgttgggcataggttaatagtttttttttgcttattttagtttttgctctgtttttat 12863428  T
Q  672 tgtaaatatt 681  Q
    ||||||||||    
T  12863427 tgtaaatatt 12863418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 292 - 681
Target Start/End: Complemental strand, 12831852 - 12831443
Alignment:
Q  292 atcacttattattacactctagtttctttggttctgtctggcatttaatgtatggatggctgggcatatctgcagttgcccctcaaaattta-------- 383  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||            
T  12831852 atcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctaggcatatctgcagttacccctcaaaatttacgggatca 12831753  T
Q  384 ----------ttcagctactatggtggttcactaagggtccgtcaatcaatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-a 472  Q
              ||||||||| |||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  12831752 ttttattcagttcagctaccatggtggttcaacaagggttcgtcaatcaatttcacaggtcatctggtttgctacagtctgggagatctggaaagaaaga 12831653  T
Q  473 attaacatgcaatttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgc 572  Q
    |  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||| ||||    
T  12831652 aacaacatgcaatttacggataaaacttgctcggtattacaggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgc 12831553  T
Q  573 ttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtatatgttaatagtt-ttttctacctattttaattgttgttctatttctat 671  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||||||| |||| | | ||||||| || ||| ||| ||| |||    
T  12831552 ttcccttcaattttcatggttggtggcttagtccgttcactatgttgggcataggttaatagtttttttttgcttattttagtttttgctctgtttttat 12831453  T
Q  672 tgtaaatatt 681  Q
    ||||||||||    
T  12831452 tgtaaatatt 12831443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 639
Target Start/End: Complemental strand, 27482783 - 27482644
Alignment:
Q  500 tgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggc 599  Q
    ||||||||| |  ||||||||||||||||||| |||||| | |||  ||||||||| |||||||    ||| ||||||||||| | |||||| |||||||    
T  27482783 tgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaattatcatggctggtggc 27482684  T
Q  600 ttagtccgttcaccatgctgggtatatgttaatagttttt 639  Q
    ||||||||||||||||| |||| ||| | ||| |||||||    
T  27482683 ttagtccgttcaccatgttgggcataggctaagagttttt 27482644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 39839963 - 39840023
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtatatgttaat 632  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||| || ||||| ||||||    
T  39839963 cttccctttaactatcatggttggtggcttagtcccttcaccatgttgtgtataggttaat 39840023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 636
Target Start/End: Complemental strand, 19315102 - 19314979
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||||||||||||| || ||| | |||||||||||||| | |||||||  |    ||||||  || | |||||||||||||||||| ||||| ||    
T  19315102 aggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgtttac 19315003  T
Q  613 catgctgggtatatgttaatagtt 636  Q
    |||||| || ||| | ||||||||    
T  19315002 catgctaggcataggctaatagtt 19314979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 618
Target Start/End: Complemental strand, 26778786 - 26778713
Alignment:
Q  545 atgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgct 618  Q
    ||||||||||| |||||||||  | | ||| ||||||| | ||||||||||||| |||||||||| ||||||||    
T  26778786 atgtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttaccatgct 26778713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 612
Target Start/End: Complemental strand, 4396757 - 4396672
Alignment:
Q  527 attaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||| |||||| | ||||| |||||||  | |||||||| ||| |||||||| ||||| ||||  |||| |||||||||||||||    
T  4396757 attaagtccctcacatttatatggttgagggagaaatttactactcttccctttaacttacatgactggtagcttagtccgttcac 4396672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 625
Target Start/End: Original strand, 32252178 - 32252231
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtata 625  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||| || ||||||    
T  32252178 cttcctttcaattatcatggttggtggcttagtccgtttaccattctcggtata 32252231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 383 - 681
Target Start/End: Complemental strand, 33693130 - 33692831
Alignment:
Q  383 attcagctactatggtggttcactaagggtccgtcaatcaatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-aattaacatg 481  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||  ||||      
T  33693130 attcagctaccatggtggttcagcaagggtccgtcaatcaatttcacaggtcatctggtttgctatagtctgggagatctggaaagaaagaaacaacaga 33693031  T
Q  482 caatttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttca 581  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||    
T  33693030 caatttacggataaaacttgctcggtattataggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttca 33692931  T
Q  582 actttcatggttggtggcttagtccgttcaccatgctgggtatatgttaatagttttttctacctattttaattgttgttctatttctattgtaaatatt 681  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||| || ||| ||| |||||||||||||||||    
T  33692930 actttcatggttggtggcttagcccgttcaccatgctgggcataggttaatagttttttctgcctattttagtttttgctctgtttctattgtaaatatt 33692831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 25845648 - 25845750
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||||||| ||||| || |||||||| ||||||||||| | ||| |||  | | || ||||| ||||  |||||||||||||||||||| | |||    
T  25845648 aggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtccatacac 25845747  T
Q  613 cat 615  Q
    |||    
T  25845748 cat 25845750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 625
Target Start/End: Original strand, 14788854 - 14788979
Alignment:
Q  500 tgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggc 599  Q
    |||||||| ||| ||||||| ||||||||||| |||||  |||||| ||||||||| | |||||||  | | ||||||| ||| |  ||||  |||||||    
T  14788854 tgctcggttttataggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggc 14788953  T
Q  600 ttagtccgttcaccatgctgggtata 625  Q
    |||||| |||  |||| |||||||||    
T  14788954 ttagtcagtttgccattctgggtata 14788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 36803185 - 36803257
Alignment:
Q  540 cttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    |||||||||||||||| | ||| ||||  ||  |||| ||||| ||||||| |||||||||||||||||||||    
T  36803185 cttttatgtggttgaaggcgaagtttaccactattcctttcaattttcatgcttggtggcttagtccgttcac 36803257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 642
Target Start/End: Original strand, 25408827 - 25408893
Alignment:
Q  576 ccttcaactttcatggttggtggcttagtccgttcaccatgctgggtatatgttaatagttttttct 642  Q
    ||||||| | ||||||||||||||||||||| || |||||| |||||||| | |||| ||| |||||    
T  25408827 ccttcaattatcatggttggtggcttagtccatttaccatgttgggtataggctaattgttatttct 25408893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 613
Target Start/End: Original strand, 26285216 - 26285282
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcacc 613  Q
    |||||||||||||||||||  ||| |||| |||||| | ||| ||||| ||||||| ||||||||||    
T  26285216 gtggttgaatgtgaaatttgctacccttcacttcaattatcaaggttgatggcttaatccgttcacc 26285282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 294 - 681
Target Start/End: Original strand, 41529148 - 41529558
Alignment:
Q  294 cacttattattacactctagtttctttggttctgtctggcatttaatgtatggatggctgggcatatctgcagttgcccctcaaaattta---------- 383  Q
    |||||||| ||||||| || ||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||              
T  41529148 cacttatttttacactgtaatttctttggttctgtatggtatttaatttatggatggctgggcatatctacagttgcccctcaaaatttacgggatcatt 41529247  T
Q  384 --------ttcagctactatggtggttcactaagggtccgtcaatcaatttcacaagtcatctggtttgctac----agtctgggagatctggaaagaaa 471  Q
            ||||| ||| |||||||||||  |||||||||||||||||||||||| |||||||||||||||||    ||||| |||||||||||||||||    
T  41529248 ttattcagttcagttaccatggtggttcagcaagggtccgtcaatcaatttcacaggtcatctggtttgctacgtacagtctaggagatctggaaagaaa 41529347  T
Q  472 -aattaacatgcaatttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatac 570  Q
     ||  |||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| ||    
T  41529348 gaaacaacaggcaatttacggataaaaattgctcggttttacaggtggttgataagattaagtccatctcttttatgtggttgaagatgaaatttaacac 41529447  T
Q  571 gcttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtatatgttaatagttttttctacctattttaattgttgttctatttcta 670  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| | ||||||| || ||| ||| ||||||    
T  41529448 gcttcccttcaattttcatggttggtgacttagtccgttcaccatgctgggcataggttaatagttttttctgcttattttagtttttgctctgtttcta 41529547  T
Q  671 ttgtaaatatt 681  Q
    |||||||||||    
T  41529548 ttgtaaatatt 41529558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 499 - 642
Target Start/End: Complemental strand, 17116516 - 17116373
Alignment:
Q  499 ttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtgg 598  Q
    |||||||||| || | ||||||||||||||||| || ||| | |||||||||||||| | ||||| |  | | ||||||||||  | |||||||||||||    
T  17116516 ttgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtgg 17116417  T
Q  599 cttagtccgttcaccatgctgggtatatgttaatagttttttct 642  Q
    ||||||| ||| |||||  |||||||| | |||||||| |||||    
T  17116416 cttagtctgtttaccatattgggtataagctaatagttatttct 17116373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 4998064 - 4997969
Alignment:
Q  491 gataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaacttt 586  Q
    |||||||||||| || || |  ||||||| ||||||||||| |||||| |||||||||||||||| | |||||||| |||  ||| ||||||||||    
T  4998064 gataaaacttgcccgataattcaggtggtggataagattaagtccctcacttttatgtggttgaaggcgaaatttactactattctcttcaacttt 4997969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 642
Target Start/End: Original strand, 38153905 - 38154034
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| |||| |||||| || ||| |||||| ||||||||| |||||||||  ||| |||||||| ||||  ||| | ||||||||||||| ||||||    
T  38153905 aggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgttcac 38154004  T
Q  613 catgctgggtatatgttaatagttttttct 642  Q
    | || | || ||| ||| |||||| |||||    
T  38154005 cttgttaggcataggttgatagttatttct 38154034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 621
Target Start/End: Original strand, 34237154 - 34237262
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    |||||||||| || ||||| || |||  ||||  ||||||||| | ||||||| |||   |||||||||| | ||||||||||||||||||||| |||||    
T  34237154 aggtggttgacaaaattaagtctctcgttttttggtggttgaaggcgaaatttcatattattcccttcaattatcatggttggtggcttagtcctttcac 34237253  T
Q  613 catgctggg 621  Q
    |||| ||||    
T  34237254 catgttggg 34237262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 621
Target Start/End: Original strand, 16560155 - 16560200
Alignment:
Q  576 ccttcaactttcatggttggtggcttagtccgttcaccatgctggg 621  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  16560155 ccttcaactatcatgtttggtggcttaatccgttcaccatgctggg 16560200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 621
Target Start/End: Complemental strand, 16605507 - 16605462
Alignment:
Q  576 ccttcaactttcatggttggtggcttagtccgttcaccatgctggg 621  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  16605507 ccttcaactatcatgtttggtggcttaatccgttcaccatgctggg 16605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 40616799 - 40616734
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||| ||||| | |  ||| |||||||| |||| || ||||||||||||||||||||||||    
T  40616799 gtggttgaaggtgaagtatgctactcttccctttaactatcttggttggtggcttagtccgttcac 40616734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 4997288 - 4997256
Alignment:
Q  580 caactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| |||||||||||||||||||||||||    
T  4997288 caacttttatggttggtggcttagtccgttcac 4997256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 419 - 641
Target Start/End: Complemental strand, 34703676 - 34703453
Alignment:
Q  419 atcaatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-aattaacatgcaatttacggataaaacttgctcggtattaaaggtg 517  Q
    |||||||| |||||| ||||||| |||||| |||||||| || |||||||||| || |||||||  ||| || |||| ||| ||||||||  |  |||||    
T  34703676 atcaattttacaagttatctggtatgctactgtctgggaaatatggaaagaaagaaataacatgttattcacagatagaacatgctcggttcttcaggtg 34703577  T
Q  518 gttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgc 617  Q
    |||||||||||||| |||||| |||||||||||||||| | ||||| |   || |||||||| |||||||||||||||||||| ||| |||||||||||     
T  34703576 gttgataagattaagtccctcacttttatgtggttgaaggcgaaatatgcaactcttccctttaactttcatggttggtggctaagttcgttcaccatgt 34703477  T
Q  618 tgggtatatgttaatagttttttc 641  Q
    |||  ||| | |||||||| ||||    
T  34703476 tggacataggctaatagttatttc 34703453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 513 - 640
Target Start/End: Complemental strand, 6723810 - 6723683
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| || |||||||| |||||| |||||||||||||||| ||||| |||||||| | ||| ||||| |||||||| ||||||||||||||||||||    
T  6723810 aggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtccgttcac 6723711  T
Q  613 catgctgggtatatgttaatagtttttt 640  Q
    |||||| || ||| | |||||| |||||    
T  6723710 catgcttggaataggctaatagcttttt 6723683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 621
Target Start/End: Complemental strand, 36098719 - 36098611
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||| ||| ||||| || ||| | |||| |||| |||| |  ||||| | ||| ||||||||||| | |||||| ||||||||||||||||||||    
T  36098719 aggtggttggtaatattaagtctctcgcctttaggtggctgaaggcaaaattcattacacttcccttcaattatcatggctggtggcttagtccgttcac 36098620  T
Q  613 catgctggg 621  Q
    |||| ||||    
T  36098619 catgttggg 36098611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 642
Target Start/End: Original strand, 44675097 - 44675224
Alignment:
Q  515 gtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcacca 614  Q
    |||||||||||||||||  | ||  | || ||||||||||| | |||||||  | | ||||||||||| | |||||||||||||||||||||||| | ||    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  615 tgctgggtatatgttaatagttttttct 642  Q
    || |||| |||   |||||||| |||||    
T  44675197 tgttgggcatagactaatagttatttct 44675224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 609
Target Start/End: Original strand, 12688178 - 12688274
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgtt 609  Q
    ||||||| ||||||||||| |  ||  |||||| ||||||||| ||||| |||   || |||||||| |||| |||||| |||||||||||||||||    
T  12688178 aggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtccgtt 12688274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 52251400 - 52251438
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttc 610  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  52251400 cttcccctcaactatcatggttggtggcttagtccgttc 52251438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 638
Target Start/End: Complemental strand, 10686284 - 10686159
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| ||||||||||| |||||  | |||  ||||||||| | ||| |||| ||  |||||| | ||  |||||||||||||| || ||||||||||    
T  10686284 aggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagtttactaatcttcccattaatcttcatggttggtggttttgtccgttcac 10686185  T
Q  613 catgctgggtatatgttaatagtttt 638  Q
     ||| |||| ||| | ||||||||||    
T  10686184 aatgttgggcataggctaatagtttt 10686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 421 - 636
Target Start/End: Complemental strand, 37738278 - 37738061
Alignment:
Q  421 caatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-aattaacatgcaatttacggataaaacttgctcggtattaaaggtggt 519  Q
    |||||||||| |  || |||||||| || |||||||| ||||||||||||| || |||||  | ||||| ||||||||| ||||||  | |  ||||||     
T  37738278 caatttcacaggatatttggtttgcaactgtctgggaaatctggaaagaaagaaataacagactatttatggataaaacatgctcgacacttcaggtggc 37738179  T
Q  520 tgataagattaactccctctcttttatgtggt-tgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgct 618  Q
    |||||||||||| || ||| |||| ||||||  |||| | |||||| | ||| |||||||| ||||||||||| |||||||||||||||||||||||  |    
T  37738178 tgataagattaagtcgctcactttcatgtggcctgaaggcgaaattcactactcttccctttaactttcatggctggtggcttagtccgttcaccatttt 37738079  T
Q  619 gggtatatgttaatagtt 636  Q
    ||| ||| | ||||||||    
T  37738078 gggcataggctaatagtt 37738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 515 - 642
Target Start/End: Original strand, 9840768 - 9840895
Alignment:
Q  515 gtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcacca 614  Q
    ||||||||||||||||| || ||| |||||||||| ||||| |  ||||||  ||| ||||| ||||| | ||||||||||||||||| |||||||||||    
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggcttaatccgttcacca 9840867  T
Q  615 tgctgggtatatgttaatagttttttct 642  Q
    || |||| ||||| |||||||| |||||    
T  9840868 tgatgggcatatgctaatagttatttct 9840895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 605
Target Start/End: Complemental strand, 44736087 - 44735982
Alignment:
Q  500 tgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggc 599  Q
    ||||||||| |  ||||||| || |||||||| |||||| |||||||||||||||| | ||| |||||||| ||||||||||| |||||||||| |||||    
T  44736087 tgctcggtagttcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggc 44735988  T
Q  600 ttagtc 605  Q
    ||||||    
T  44735987 ttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 513 - 612
Target Start/End: Original strand, 39117418 - 39117517
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||| ||||||||||| |||||| | |||||||||||||  | |||||||| ||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  39117418 aggtggtggataagattaagtccctcacatttatgtggttgagggagaaatttactactctttccttcaacttacatggctggtggcttagtccgttcac 39117517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 642
Target Start/End: Original strand, 27009186 - 27009327
Alignment:
Q  501 gctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggct 600  Q
    |||||||| || | ||||||||||||||||| || ||| |||||| ||| ||||| | |||||||| | | ||||||||||| |  ||||||||||||||    
T  27009186 gctcggtaatacacgtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggct 27009285  T
Q  601 tagtccgttcaccatgctgggtatatgttaatagttttttct 642  Q
    ||||||||| ||||| ||||  ||| | |||||||| |||||    
T  27009286 tagtccgtttaccatactggacataggctaatagttatttct 27009327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 420 - 636
Target Start/End: Complemental strand, 27708379 - 27708162
Alignment:
Q  420 tcaatttcacaagtcatctggtttgctacagtctgggagatctggaaagaaa-aattaacatgcaatttacggataaaacttgctcggtattaaaggtgg 518  Q
    ||||||| ||| || || |||||| ||||  |||| || ||||||||||||| || |||||    |||||| || ||||| |||| |||| |  ||||||    
T  27708379 tcaattttacaggttatatggttttctaccatctgagaaatctggaaagaaagaaataacagattatttacagacaaaacatgcttggtaattcaggtgg 27708280  T
Q  519 ttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgct 618  Q
    ||||||||||||| || ||| |||||| |||||| || | |||||||  ||| |||||||||||  |||||||||||||||||| || ||||||| | ||    
T  27708279 ttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgttcaccgtact 27708180  T
Q  619 gggtatatgttaatagtt 636  Q
    ||| ||| | ||||||||    
T  27708179 gggcataggctaatagtt 27708162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 522 - 641
Target Start/End: Original strand, 18766679 - 18766798
Alignment:
Q  522 ataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgctggg 621  Q
    |||||||||| |||||| | |||||||||||||  | |||||||| ||  |||||||| || |||||||| |||||||||| ||||||||| || |||||    
T  18766679 ataagattaagtccctcacatttatgtggttgatggcgaaatttactaatcttccctttaattttcatggctggtggcttaatccgttcacaatactggg 18766778  T
Q  622 tatatgttaatagttttttc 641  Q
     ||||| |||| ||| ||||    
T  18766779 catatgctaattgttatttc 18766798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 642
Target Start/End: Complemental strand, 36176740 - 36176612
Alignment:
Q  513 aggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||||||||||||| || ||| | ||||||||||| |  |||||||||  | | |||| |||||| | ||||||||||||  ||||||| || ||    
T  36176740 aggtggttgataagattaagtcgctcacatttatgtggtt-atggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccatttac 36176642  T
Q  613 catgctgggtatatgttaatagttttttct 642  Q
    |||| |||||||| | |||||||| |||||    
T  36176641 catgttgggtataggctaatagttatttct 36176612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 641
Target Start/End: Original strand, 30505717 - 30505843
Alignment:
Q  515 gtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcacca 614  Q
    ||||||||||||||||| |  ||| | ||||| | |||||| | |||||||  | | ||||||||||| | ||||||||||||| |||||| ||| ||||    
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  615 tgctgggtatatgttaatagttttttc 641  Q
    || |||| ||| | |||||||| ||||    
T  30505817 tgttgggcataggctaatagttatttc 30505843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 612
Target Start/End: Original strand, 24739851 - 24739916
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||| ||||| | |  ||| |||||||| |||| |||||||||||||||||||||||||||    
T  24739851 gtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggcttagtccgttcac 24739916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 615
Target Start/End: Complemental strand, 33645932 - 33645833
Alignment:
Q  516 tggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccat 615  Q
    |||||||||||||||| || ||| | |||| ||||||||| |  ||||||  ||| ||||| ||||| |  |||||||||||| |||||| |||||||||    
T  33645932 tggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccat 33645833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 841613 - 841548
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    ||||||||| ||||| | |  ||| |||||||| |||| |||||||||||||||||||| ||||||    
T  841613 gtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtctgttcac 841548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 45131166 - 45131117
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcaccatgctggg 621  Q
    ||||||||||| | |||||| |||||||||||||| || |||||||||||    
T  45131166 cttcccttcaattatcatgggtggtggcttagtccatttaccatgctggg 45131117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 625
Target Start/End: Original strand, 38409019 - 38409099
Alignment:
Q  545 atgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggtata 625  Q
    |||| |||||| ||||||||   ||| ||||||||||| | ||||||||||||| | |||||||| ||||| || ||||||    
T  38409019 atgtagttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtccgtttaccattctaggtata 38409099  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 612
Target Start/End: Complemental strand, 40426966 - 40426926
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  40426966 cttccctttaactatcatggttggtggcttaatccgttcac 40426926  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 524 - 642
Target Start/End: Original strand, 2682773 - 2682891
Alignment:
Q  524 aagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatgctgggta 623  Q
    |||||||| |||||  |||||| ||||||||| |||||||||  |||  ||| |||||| | ||||||||||||||||||||| |||||||||||| | |    
T  2682773 aagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcctttcaccatgctgagca 2682872  T
Q  624 tatgttaatagttttttct 642  Q
    || ||||| |||| |||||    
T  2682873 taggttaaaagttatttct 2682891  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 610
Target Start/End: Original strand, 12688190 - 12688284
Alignment:
Q  516 tggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttc 610  Q
    |||| ||||||||||| |||||| | ||| |||||||||| | |||||||| ||| |||||||| || || ||||| ||||||||||||||||||    
T  12688190 tggtggataagattaagtccctcacatttgtgtggttgaaggagaaatttactactcttccctttaatttacatggctggtggcttagtccgttc 12688284  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 500 - 620
Target Start/End: Original strand, 34714902 - 34715022
Alignment:
Q  500 tgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggc 599  Q
    ||||||||| || | ||||||||||||||||| || ||| |||||| ||||||||| |  ||||||| | | |||||| |||| |  |||||||||||||    
T  34714902 tgctcggtaatacacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggc 34715001  T
Q  600 ttagtccgttcaccatgctgg 620  Q
    |||||| ||| ||||| ||||    
T  34715002 ttagtctgtttaccatactgg 34715022  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 611
Target Start/End: Original strand, 27105243 - 27105369
Alignment:
Q  485 tttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaact 584  Q
    |||||||  ||| |||||||||| | | ||||||| ||||||||||| |||||| | ||| |||||||||| | ||| |||| |||  ||||||| || |    
T  27105243 tttacggtcaaatcttgctcggtgtcacaggtggtggataagattaagtccctcacatttgtgtggttgaaggagaagtttactactattccctttaatt 27105342  T
Q  585 ttcatggttggtggcttagtccgttca 611  Q
    | ||||| |||||||||| ||||||||    
T  27105343 tacatggctggtggcttaatccgttca 27105369  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 611
Target Start/End: Original strand, 27147052 - 27147178
Alignment:
Q  485 tttacggataaaacttgctcggtattaaaggtggttgataagattaactccctctcttttatgtggttgaatgtgaaatttaatacgcttcccttcaact 584  Q
    |||||||  ||| |||||||||| | | ||||||| ||||||||||| |||||| | ||| |||||||||| | ||| |||| |||  ||||||| || |    
T  27147052 tttacggtcaaatcttgctcggtgtcacaggtggtggataagattaagtccctcacatttgtgtggttgaaggagaagtttactactattccctttaatt 27147151  T
Q  585 ttcatggttggtggcttagtccgttca 611  Q
    | ||||| |||||||||| ||||||||    
T  27147152 tacatggctggtggcttaatccgttca 27147178  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 32533129 - 32533064
Alignment:
Q  547 gtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 612  Q
    |||||||||  |||| |||  ||| |||||||| |||| |||||||||||||||||||||||||||    
T  32533129 gtggttgaagatgaagtttgctactcttccctttaactatcatggttggtggcttagtccgttcac 32533064  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 609
Target Start/End: Original strand, 11324494 - 11324563
Alignment:
Q  540 cttttatgtggttgaatgtgaaatttaatacgcttcccttcaactttcatggttggtggcttagtccgtt 609  Q
    |||||| ||||||||| | |||||||  | | ||||||||||| | |||||| |||||||||||||||||    
T  11324494 cttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtccgtt 11324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 17292806 - 17292757
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcaccatgctggg 621  Q
    ||||||||||| | ||||||||| |||||||||||||| | |||||||||    
T  17292806 cttcccttcaattatcatggttgatggcttagtccgtttatcatgctggg 17292757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 613
Target Start/End: Original strand, 18672093 - 18672134
Alignment:
Q  572 cttcccttcaactttcatggttggtggcttagtccgttcacc 613  Q
    |||||||| |||| ||||||||||||||| ||||||||||||    
T  18672093 cttccctttaactatcatggttggtggctgagtccgttcacc 18672134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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