View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_70 (Length: 266)
Name: NF0599_low_70
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 17984768 - 17984657
Alignment:
| Q |
9 |
atcataggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattga |
108 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
17984768 |
atcaaaggcaatgacaaaagtaataagactatgtaataataataagattcactaagaattggtagattcaaagtcaaatcttaatacaatccatgattga |
17984669 |
T |
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| Q |
109 |
taattctcacac |
120 |
Q |
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|||||||||||| |
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| T |
17984668 |
taattctcacac |
17984657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 17980973 - 17980863
Alignment:
| Q |
9 |
atcataggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattga |
108 |
Q |
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|||| |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
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| T |
17980973 |
atcaaaggcaatgataaaagtaataagactatgtaataata-taagattcactaagaattggtagattcaaagtcaaatcttaataaaatccatgattga |
17980875 |
T |
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| Q |
109 |
taattctcacac |
120 |
Q |
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|||||||||||| |
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| T |
17980874 |
taattctcacac |
17980863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 29830777 - 29830849
Alignment:
| Q |
48 |
taataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac |
120 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
29830777 |
taataagattcactaagaattgagagattcaaagtcaaatcttaacacaatctattattgataattctcacac |
29830849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 15851296 - 15851397
Alignment:
| Q |
15 |
ggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattc |
114 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||| || |||| |||| | |||||| || ||||||||| ||||| | |||||||||||| |
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| T |
15851296 |
ggcaatgacaaaagtaataagactatgtagtaataataagatccaataag-attgagagattcaatgtaaaatcttaacacaatttaagattgataattc |
15851394 |
T |
|
| Q |
115 |
tca |
117 |
Q |
| |
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||| |
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| T |
15851395 |
tca |
15851397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 25380812 - 25380714
Alignment:
| Q |
21 |
gacaaaagtaataagactatgtaataataataagattcacta--agaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctca |
117 |
Q |
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||||||||||||||||| ||| |||||||||||||||| ||| ||||||| |||||| ||||||| ||||| ||||| |||||||||||||| |
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| T |
25380812 |
gacaaaagtaataagaccatgcaataataataagattcgctaggagaattgagtgattcaatgtcaaatattaatgcaatctgttattgataattctca |
25380714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 12153096 - 12153140
Alignment:
| Q |
15 |
ggcaacgacaaaagtaataagactatgtaataataataagattca |
59 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
12153096 |
ggcaatgacaaaagtaataagactatgcaataataatatgattca |
12153140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 10203048 - 10203132
Alignment:
| Q |
15 |
ggcaacgacaaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatc |
99 |
Q |
| |
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||||| || |||| || ||||||||||| ||| ||||||||||||| ||||| | ||||||||||||||||||| |||||| |
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| T |
10203048 |
ggcaatgaaaaaattattaagactatgttcaaatgataagattcactagaaattgagagattcaaagtcaaatcttaacacaatc |
10203132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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