View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_74 (Length: 260)
Name: NF0599_low_74
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_74 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 6373051 - 6373254
Alignment:
| Q |
51 |
agccacagaacggcctgggatggaaggatcagcagcatctttgttttgcttaagaatcacaatacccttaagctttatgaccttgttcctagctggcact |
150 |
Q |
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| T |
6373051 |
agccacagaacggcctgggatggaaggatcagcagcatctttgttttgcttaagaatcacaatacccttaagctttgtgaccttgttcctagctgacact |
6373150 |
T |
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| Q |
151 |
gacacgaatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgacagaaatgtttgtgtcttgtaaccatgcgggatgcttagtatt |
250 |
Q |
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| T |
6373151 |
gacacgaatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatt |
6373250 |
T |
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| Q |
251 |
tata |
254 |
Q |
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|||| |
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| T |
6373251 |
tata |
6373254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 6412213 - 6412310
Alignment:
| Q |
157 |
aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgacagaaatgtttgtgtcttgtaaccatgcgggatgcttagtatttata |
254 |
Q |
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| T |
6412213 |
aatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttata |
6412310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 6393073 - 6393169
Alignment:
| Q |
157 |
aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgacagaaatgtttgtgtcttgtaaccatgcgggatgcttagtatttata |
254 |
Q |
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| T |
6393073 |
aatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatg-gggatgcttggtatttata |
6393169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 6365494 - 6365590
Alignment:
| Q |
157 |
aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgacagaaatgtttgtgtcttgtaaccatgcgggatgcttagtatttata |
254 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||| | |||||| |||| |||| | ||||||||||||||||||| |
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| T |
6365494 |
aatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaag-gggatgcttagtatttata |
6365590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 7463185 - 7463261
Alignment:
| Q |
177 |
ttaaatgtattacactatctttgtcaaatgacagaaatgtttgtgtcttgtaaccatgcgggatgcttagtatttata |
254 |
Q |
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|||||| ||||||||||| |||| |||||| ||||||| ||||||||||||||||| ||| |||||||||| |||| |
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| T |
7463185 |
ttaaatatattacactatatttggtaaatgaaagaaatgcctgtgtcttgtaaccatg-ggggtgcttagtatctata |
7463261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 6356084 - 6356160
Alignment:
| Q |
177 |
ttaaatgtattacactatctttgtcaaatgacagaaatgtttgtgtcttgtaaccatgcgggatgcttagtatttata |
254 |
Q |
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|||||||||||||||||| | || |||||| ||||| | ||||||||||||||||| ||| || |||||||||||| |
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| T |
6356084 |
ttaaatgtattacactatatatggtaaatgaaagaaaggcttgtgtcttgtaaccat-aggggtggttagtatttata |
6356160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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