View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_80 (Length: 252)
Name: NF0599_low_80
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_80 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 30853129 - 30852906
Alignment:
| Q |
29 |
aaaaaagttatctatggttattgttgactatatgggaaaagctttgaaaatggatgaaaaagaaatgagtatgttttttgaagatggtgtccaatcaatg |
128 |
Q |
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| T |
30853129 |
aaaaaagttatctatggttattgttgactatatgggaaaagctttgaaaatggatgaaaaagaaatgagtatgttttttgaagatggtgtccaatcaatg |
30853030 |
T |
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| Q |
129 |
aggatgaactattaccctccatgtccacagccagaaaaggttattggcctaacaccccattcagatggatcagcactcaccatccttctacaactcaatg |
228 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
30853029 |
aggatgaactattaccctccatgtccacaaccagaaaaggttattggcctaacaccccattcagatggatctgcactcactatccttctacaactcaatg |
30852930 |
T |
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| Q |
229 |
atgtagaagggctccaagtaagga |
252 |
Q |
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||||||||||||||||||| |||| |
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| T |
30852929 |
atgtagaagggctccaagtgagga |
30852906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 30828236 - 30828013
Alignment:
| Q |
29 |
aaaaaagttatctatggttattgttgactatatgggaaaagctttgaaaatggatgaaaaagaaatgagtatgttttttgaagatggtgtccaatcaatg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30828236 |
aaaaaagttatctatggttattgttgactatatgggaaaagctttgaaaatggatgaaaaagaaatgagtatgttttttgaagatgatgtccaatcaatg |
30828137 |
T |
|
| Q |
129 |
aggatgaactattaccctccatgtccacagccagaaaaggttattggcctaacaccccattcagatggatcagcactcaccatccttctacaactcaatg |
228 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
30828136 |
aggatgaactattaccctccatgtccacaaccagaaaaggttattggcctaacaccccattcagatggatctgcactcactatccttctacaactcaatg |
30828037 |
T |
|
| Q |
229 |
atgtagaagggctccaagtaagga |
252 |
Q |
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||||||||||||||||||| |||| |
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| T |
30828036 |
atgtagaagggctccaagtgagga |
30828013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 30835502 - 30835450
Alignment:
| Q |
126 |
atgaggatgaactattaccctccatgtccacagccagaaaaggttattggcct |
178 |
Q |
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||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
30835502 |
atgaggatgaactattaccctccttgtcctcaaccagaaaaggttattggcct |
30835450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 8780 - 8824
Alignment:
| Q |
119 |
ccaatcaatgaggatgaactattaccctccatgtccacagccaga |
163 |
Q |
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|||||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
8780 |
ccaatcaatgaggatgaattattaccctccatgtcctcaaccaga |
8824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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